Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0042
(696 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 128 5e-30
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 76 3e-14
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 73 1e-13
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 72 3e-13
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 70 2e-12
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 67 9e-12
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 64 8e-11
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 64 8e-11
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 54 9e-08
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 54 9e-08
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 37 0.015
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 35 0.045
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 34 0.078
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 34 0.078
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 34 0.078
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 34 0.10
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 33 0.14
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 33 0.14
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 33 0.18
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 33 0.24
At2g17790.1 68415.m02062 vacuolar protein sorting-associated pro... 31 0.96
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 30 1.3
At5g64910.1 68418.m08165 expressed protein ; expression support... 29 2.2
At4g16530.1 68417.m02502 expressed protein contains Pfam profile... 29 3.9
At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containi... 29 3.9
At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing ... 28 5.1
At5g02200.1 68418.m00141 phytochrome A specific signal transduct... 28 6.8
At2g39910.1 68415.m04905 expressed protein 28 6.8
At1g16560.3 68414.m01985 Per1-like family protein contains Pfam ... 28 6.8
At1g16560.2 68414.m01984 Per1-like family protein contains Pfam ... 28 6.8
At1g16560.1 68414.m01983 Per1-like family protein contains Pfam ... 28 6.8
At5g20470.1 68418.m02433 myosin, putative similar to PIR|T00727 ... 27 9.0
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 128 bits (308), Expect = 5e-30
Identities = 61/81 (75%), Positives = 67/81 (82%)
Frame = +1
Query: 25 SSKMQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 204
+S MQPQI+LL+EGTD +QGK QLVSNINAC V D VRTTLGPRGMDKLI D G I
Sbjct: 2 ASMMQPQIILLKEGTDTSQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTI 61
Query: 205 SNDGATIMKLLDIIHPALKLL 267
SNDGATIMKLLDI+HPA K+L
Sbjct: 62 SNDGATIMKLLDIVHPAAKIL 82
Score = 119 bits (286), Expect = 2e-27
Identities = 58/87 (66%), Positives = 70/87 (80%)
Frame = +3
Query: 249 PCAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 428
P AK LVDIAKSQD+EVGDGTT+VV+LA E LK KPF+E+GVH + LIR+ RTAS LAI
Sbjct: 77 PAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSYRTASTLAI 136
Query: 429 EKIKEQAVKIDNKSPEEQRDLLLKCAS 509
K+KE AV I+ KS EE++ LL KCA+
Sbjct: 137 AKVKELAVSIEGKSVEEKKGLLAKCAA 163
Score = 55.2 bits (127), Expect = 4e-08
Identities = 32/62 (51%), Positives = 43/62 (69%)
Frame = +2
Query: 509 TAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPGGALEDSFPGFPEWAFKK 688
T +SSKLI +K+ F+ +VVDAV+++ L++IGIKKVPGG + DSF AFKK
Sbjct: 164 TTLSSKLIGGEKEFFATMVVDAVMAIGNDDR-LNLIGIKKVPGGNMRDSFL-VDGVAFKK 221
Query: 689 TF 694
TF
Sbjct: 222 TF 223
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 75.8 bits (178), Expect = 3e-14
Identities = 43/88 (48%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +3
Query: 246 SPCAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLA 425
+P AK LVDI+K QD EVGDGTTSVV+LAGE+L+ + V +HP +I R AS A
Sbjct: 73 NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGYRMASECA 132
Query: 426 IEKIKEQAVKIDNK-SPEEQRDLLLKCA 506
+ ++ IDNK + E+ R LLK A
Sbjct: 133 RNALLKRV--IDNKDNAEKFRSDLLKIA 158
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Frame = +1
Query: 52 LLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVD-HNGKAV-ISNDGATI 225
+ ++ + +G+ +++ + D V++TLGP+GMDK++ G AV ++NDGATI
Sbjct: 6 IFKDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGATI 65
Query: 226 MKLLDIIHPALKLL 267
+K L I +PA K+L
Sbjct: 66 LKSLHIDNPAAKVL 79
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/55 (41%), Positives = 37/55 (67%)
Frame = +2
Query: 494 IEVCITAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPGGALEDSF 658
+++ +T + SK++ Q K+HF+++ VDAV L L+ I I K PGG+L+DSF
Sbjct: 155 LKIAMTTLCSKILSQDKEHFAEMAVDAVFRLKGS-TNLEAIQIIKKPGGSLKDSF 208
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 73.3 bits (172), Expect = 1e-13
Identities = 33/73 (45%), Positives = 50/73 (68%)
Frame = +1
Query: 70 DQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIH 249
D+ G+ N+ ACQ V + V+T+LGP G+DK++VD G I+NDGATI+++L++ H
Sbjct: 13 DRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEH 72
Query: 250 PALKLLWILQSLK 288
PA K+L L L+
Sbjct: 73 PAAKVLVELAELQ 85
Score = 68.9 bits (161), Expect = 3e-12
Identities = 34/68 (50%), Positives = 45/68 (66%)
Frame = +3
Query: 249 PCAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 428
P AK LV++A+ QD EVGDGTTSVVI+A E+LKR V +HP +I R A R +
Sbjct: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESC 132
Query: 429 EKIKEQAV 452
+ I+E+ V
Sbjct: 133 KYIEEKLV 140
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Frame = +2
Query: 509 TAMSSKLIHQQKDHFSKIVVDAVLSLDTP------LLPLDMIGIKKVPGGALEDSF 658
T+MSSKLI D F+ +VV+AVLS+ P+ I I K G + DS+
Sbjct: 157 TSMSSKLISGDSDFFANLVVEAVLSVKMTNQRGEIKYPIKGINILKAHGQSARDSY 212
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 72.1 bits (169), Expect = 3e-13
Identities = 30/56 (53%), Positives = 45/56 (80%)
Frame = +1
Query: 100 SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPALKLL 267
+NIN+ + V DAVRT+LGP+GMDK+I NG+ +I+NDGATI+ ++++ PA K+L
Sbjct: 32 ANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKML 87
Score = 67.7 bits (158), Expect = 7e-12
Identities = 35/87 (40%), Positives = 54/87 (62%)
Frame = +3
Query: 249 PCAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 428
P AK LV+++KSQD+ GDGTT+VV++AG +LK + + G+HP V+ ++ A AI
Sbjct: 82 PAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAI 141
Query: 429 EKIKEQAVKIDNKSPEEQRDLLLKCAS 509
+ + AV ++ RD L+K AS
Sbjct: 142 DILTAMAVPVE----LTDRDSLVKSAS 164
Score = 30.7 bits (66), Expect = 0.96
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = +2
Query: 488 SPIEVCITAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLP--LDMIGIK--KVPGGALEDS 655
S ++ T+++SK++ Q + + VDAVLS+ P P +D+ IK K GG ++D+
Sbjct: 158 SLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVIDPEKPEIVDLRDIKIVKKLGGTVDDT 217
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/85 (38%), Positives = 54/85 (63%)
Frame = +3
Query: 249 PCAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 428
P AK++++++++QD EVGDGTTSV++LAGE+L + F+E+ HP V+ RA A +I
Sbjct: 73 PAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAYIKALEDSI 132
Query: 429 EKIKEQAVKIDNKSPEEQRDLLLKC 503
+ + A+ ID + L+ C
Sbjct: 133 AVLDKIAMSIDINDRSQVLGLVKSC 157
Score = 66.5 bits (155), Expect = 2e-11
Identities = 31/76 (40%), Positives = 45/76 (59%)
Frame = +1
Query: 34 MQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISND 213
M +L+L + + G NI A + V D +RTTLGPR M K+++D G V++ND
Sbjct: 1 MHAPVLVLSDSLKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTND 60
Query: 214 GATIMKLLDIIHPALK 261
G I++ LD+ HPA K
Sbjct: 61 GNAILRELDVAHPAAK 76
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 67.3 bits (157), Expect = 9e-12
Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Frame = +1
Query: 34 MQPQIL--LLREGTDQTQGKPQ-LVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 204
MQP + +L+EG G + ++ NI AC+ + RT+LGP GM+K++++H K +
Sbjct: 6 MQPYGIQSMLKEGYRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFV 65
Query: 205 SNDGATIMKLLDIIHPALKLL 267
+ND ATI+ L+I HPA KLL
Sbjct: 66 TNDAATIVNELEIQHPAAKLL 86
Score = 51.2 bits (117), Expect = 6e-07
Identities = 27/74 (36%), Positives = 41/74 (55%)
Frame = +3
Query: 249 PCAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 428
P AK LV AK+Q E+GDG + AGE+L+ + + G+HP +I A A+
Sbjct: 81 PAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGYTKAVSKAV 140
Query: 429 EKIKEQAVKIDNKS 470
E I EQ V+ +++
Sbjct: 141 E-ILEQLVETGSET 153
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 64.1 bits (149), Expect = 8e-11
Identities = 27/69 (39%), Positives = 48/69 (69%)
Frame = +3
Query: 255 AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEK 434
AK +V++++SQD E+GDGTT VV++AG +L++ + ++ G+HP + ASR+A+E
Sbjct: 8 AKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEH 67
Query: 435 IKEQAVKID 461
++ A K +
Sbjct: 68 LERIAQKFE 76
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Frame = +2
Query: 494 IEVCITAMSSKLIHQQKDHFSKIVVDAVLS---LDTPLLPLDMIGIKKVPGGALEDS 655
++ C+T +SSK++++ K ++I V AVL+ L+ + LD+I ++ GG LED+
Sbjct: 86 VQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDLIKVEGKVGGKLEDT 142
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 64.1 bits (149), Expect = 8e-11
Identities = 27/69 (39%), Positives = 48/69 (69%)
Frame = +3
Query: 255 AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEK 434
AK +V++++SQD E+GDGTT VV++AG +L++ + ++ G+HP + ASR+A+E
Sbjct: 84 AKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEH 143
Query: 435 IKEQAVKID 461
++ A K +
Sbjct: 144 LERIAQKFE 152
Score = 54.0 bits (124), Expect = 9e-08
Identities = 28/75 (37%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Frame = +1
Query: 49 LLLREGTDQTQ--GKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGAT 222
++LRE +T+ G +NI A + V +R++LGP+GMDK++ +G I+NDGAT
Sbjct: 13 IILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGAT 72
Query: 223 IMKLLDIIHPALKLL 267
I++ +D+ + KL+
Sbjct: 73 ILEQMDVDNQIAKLM 87
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Frame = +2
Query: 494 IEVCITAMSSKLIHQQKDHFSKIVVDAVLS---LDTPLLPLDMIGIKKVPGGALEDS 655
++ C+T +SSK++++ K ++I V AVL+ L+ + LD+I ++ GG LED+
Sbjct: 162 VQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDLIKVEGKVGGKLEDT 218
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 54.0 bits (124), Expect = 9e-08
Identities = 25/62 (40%), Positives = 38/62 (61%)
Frame = +3
Query: 246 SPCAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLA 425
+P A + A +QD GDGTTS VI GE++K+ + ++EG+HPRVL+ A R
Sbjct: 70 NPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRAT 129
Query: 426 IE 431
++
Sbjct: 130 LQ 131
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/49 (34%), Positives = 32/49 (65%)
Frame = +1
Query: 106 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP 252
INA + + D +++ LGP+G K++V +G ++ DG T++K + I +P
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNP 71
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 54.0 bits (124), Expect = 9e-08
Identities = 25/62 (40%), Positives = 38/62 (61%)
Frame = +3
Query: 246 SPCAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLA 425
+P A + A +QD GDGTTS VI GE++K+ + ++EG+HPRVL+ A R
Sbjct: 70 NPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRAT 129
Query: 426 IE 431
++
Sbjct: 130 LQ 131
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/49 (34%), Positives = 32/49 (65%)
Frame = +1
Query: 106 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP 252
INA + + D +++ LGP+G K++V +G ++ DG T++K + I +P
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNP 71
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 36.7 bits (81), Expect = 0.015
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +3
Query: 255 AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEK 434
A + ++A + GDGTT+ ILA EI+K V G +P L R + + IE+
Sbjct: 115 AALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEE 174
Query: 435 IKEQA 449
++++A
Sbjct: 175 LQKKA 179
Score = 34.3 bits (75), Expect = 0.078
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 124 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 243
+ D V TLGPRG + +++D G + NDG TI + +++
Sbjct: 68 LADCVGLTLGPRGRN-VVLDEFGSPKVVNDGVTIARAIEL 106
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 35.1 bits (77), Expect = 0.045
Identities = 16/70 (22%), Positives = 37/70 (52%)
Frame = +3
Query: 255 AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEK 434
AK + A + GDGTT+ V+LA ++ V G +P ++ R + ++ + +
Sbjct: 122 AKLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTKALVAE 181
Query: 435 IKEQAVKIDN 464
+K+ + ++++
Sbjct: 182 LKKMSKEVED 191
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 124 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP 252
+ D V TLGP+G + ++ G I NDG T+ + +++ P
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDP 116
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 34.3 bits (75), Expect = 0.078
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +1
Query: 124 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 243
+ DAV TLGPRG + ++ + + VI NDG TI K +++
Sbjct: 55 LADAVSITLGPRGRNVVLAEKDTIKVI-NDGVTIAKSIEL 93
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 255 AKTLVDIAKSQDAEVGDGTTSVVILAGEILK 347
A + ++A + GDGTT+ +ILA E++K
Sbjct: 102 ATLIQEVAIKMNESAGDGTTTAIILAREMIK 132
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 34.3 bits (75), Expect = 0.078
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +3
Query: 276 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 455
AK+ D GDGTT+ V+LA + V G +P ++ R + ++ + ++K+ + +
Sbjct: 134 AKTNDL-AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKE 192
Query: 456 IDN 464
+++
Sbjct: 193 VED 195
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 124 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP 252
+ D V TLGP+G + ++ G I NDG T+ + +++ P
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDP 120
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 34.3 bits (75), Expect = 0.078
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +3
Query: 276 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 455
AK+ D GDGTT+ V+LA + V G +P ++ R + ++ + ++K+ + +
Sbjct: 134 AKTNDL-AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKE 192
Query: 456 IDN 464
+++
Sbjct: 193 VED 195
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 124 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP 252
+ D V TLGP+G + ++ G I NDG T+ + +++ P
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDP 120
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 124 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLD 240
+ DAV+ T+GP+G + +I G ++ DG T+ K ++
Sbjct: 54 LADAVKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAKSIE 92
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 124 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLD 240
+ DAV+ T+GP+G + +I G ++ DG T+ K ++
Sbjct: 53 LADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIE 91
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 124 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMK 231
V +AV+ T+GP+G + +I G I+ DG T+ K
Sbjct: 53 VAEAVKVTMGPKGRNVIIESSYGGPKITKDGVTVAK 88
Score = 31.1 bits (67), Expect = 0.73
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +3
Query: 255 AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEK 434
A+ + +A + + GDGTT +L IL V GV+ L + A +
Sbjct: 101 AELVKQVASATNKVAGDGTTCATVLTQAILIEGCKSVAAGVNVMDLRVGINMAIAAVVSD 160
Query: 435 IKEQAVKIDNKSPEE 479
+K +AV I +PEE
Sbjct: 161 LKSRAVMI--STPEE 173
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +3
Query: 276 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 455
AK+ D GDGTT+ V+LA + V G +P ++ R + ++ + ++K + +
Sbjct: 130 AKTNDL-AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVNELKLMSKE 188
Query: 456 IDN 464
+++
Sbjct: 189 VED 191
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 124 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP 252
+ D V TLGP+G + ++ G I NDG T+ + +++ P
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDP 116
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 121 LVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP 252
+V + TLGP+G + ++ + G I NDG T++K +++ P
Sbjct: 61 MVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDP 104
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/63 (23%), Positives = 34/63 (53%)
Frame = +3
Query: 276 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 455
AK+ D GDG+T+ +ILA ++ + G +P + R + ++ + ++K + +
Sbjct: 118 AKTNDL-AGDGSTTSIILAHGLITEGIKVISAGTNPIQVARGIEKTTKALVLELKSMSRE 176
Query: 456 IDN 464
I++
Sbjct: 177 IED 179
>At2g17790.1 68415.m02062 vacuolar protein sorting-associated
protein 35 family protein / VPS35 family protein similar
to vacuolar protein sorting 35 [Mus musculus]
GI:11875394; contains Pfam profile PF03635: Vacuolar
protein sorting-associated protein 35
Length = 830
Score = 30.7 bits (66), Expect = 0.96
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 252 CAKTLVDIAKS--QDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRL 422
C K + IA S Q A G+T V L EIL + F E+GV P++ + +V + +L
Sbjct: 730 CLKRALKIANSAQQVANTARGSTGSVTLFIEILNKYLYFYEKGV-PQITVESVESLIKL 787
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +1
Query: 49 LLLREGTDQTQ--GKPQLVSNINACQLVVDAVRTTLGPRGMDK 171
++LRE +T+ G +NI+A + V +R++LGP+GM+K
Sbjct: 13 IILREQDQKTRLKGIDAQKANISAGKAVARILRSSLGPKGMEK 55
>At5g64910.1 68418.m08165 expressed protein ; expression supported
by MPSS
Length = 487
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 542 KDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPG 637
KD ++V V+ +D+P+ P D IG+ V G
Sbjct: 245 KDENKDVLVPVVVCIDSPIPPSDEIGVASVQG 276
>At4g16530.1 68417.m02502 expressed protein contains Pfam profile
PF04510: Family of unknown function (DUF577)
Length = 774
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 342 LKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQ 482
LKR P E+G V+ AV ++ + +E ++ + K + + EE+
Sbjct: 616 LKRASPEAEKGKDEAVVAAAVVKSTAVVVESVESEEPKTEKEEDEER 662
>At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 721
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = -2
Query: 359 RLQPLQNFTGQYHYRGGSIANLGILRLCNIHKSFSAG*MISSSFMIVAP 213
+L+ + F Y+ GS+A +L C HK+ + ++ M++ P
Sbjct: 498 KLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQP 546
>At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing
protein similar to zinc finger protein OBP2 GI:5059394
from [Arabidopsis thaliana]
Length = 340
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = -2
Query: 413 RCSDCSDQNTRVNTFFNKRLQPLQNFTG---QYHYRGGSIANLGILRLCNIHKSFSAG*M 243
+C C NT+ F N L ++F +Y RGG++ N+ + C +K +G
Sbjct: 95 KCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKGKSGNS 154
Query: 242 ISSS 231
SSS
Sbjct: 155 KSSS 158
>At5g02200.1 68418.m00141 phytochrome A specific signal transduction
component-related contains weak similarity to
phytochrome A specific signal transduction component
PAT3 [Arabidopsis thaliana] gi|19421998|gb|AAL87850 and
far-red elongated hypocotyl protein 1 [Arabidopsis
thaliana] gi|17148773|gb|AAL35819
Length = 181
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Frame = +3
Query: 207 KRWCNDHEATGYHSPCAKTLVDIAK----SQDAEVGDGTTSVVILAGEILKRLKPFVEEG 374
K +C++H+A+ +S C +++D A+ ++ + D +S G L K
Sbjct: 28 KHFCSEHQASLVNSSCPSSVIDYAECSYAMENTKTSDEASSSASFTGPSLYMFK------ 81
Query: 375 VHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRD 488
+ ++ A I++ K+D+K+ E+ +D
Sbjct: 82 --DSIYSTGSSSSGYAATSSIEQCFSKVDHKTQEDTQD 117
>At2g39910.1 68415.m04905 expressed protein
Length = 436
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 205 SNDGATIMKLLDIIHPALKLLWILQSLKMPRLAME 309
S+D T++ +L+ + ++L WI S PRL E
Sbjct: 341 SDDAETVLLVLERLETVVRLTWIRHSPVFPRLVDE 375
>At1g16560.3 68414.m01985 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +3
Query: 111 CLSTCC--RCGQNHPGSPWYGQADCRSQWK 194
C+ C +C + G PWY Q QWK
Sbjct: 43 CVGQLCFPQCNSSSDGGPWYIQEPLYLQWK 72
>At1g16560.2 68414.m01984 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +3
Query: 111 CLSTCC--RCGQNHPGSPWYGQADCRSQWK 194
C+ C +C + G PWY Q QWK
Sbjct: 43 CVGQLCFPQCNSSSDGGPWYIQEPLYLQWK 72
>At1g16560.1 68414.m01983 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +3
Query: 111 CLSTCC--RCGQNHPGSPWYGQADCRSQWK 194
C+ C +C + G PWY Q QWK
Sbjct: 43 CVGQLCFPQCNSSSDGGPWYIQEPLYLQWK 72
>At5g20470.1 68418.m02433 myosin, putative similar to PIR|T00727
myosin heavy chain PCR43 [Arabidopsis thaliana]
Length = 556
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 414 SRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASQRCHRN 527
S I+ +++QA+ I ++ D+L+KC SQ N
Sbjct: 256 SESEIQVLRQQALAISGETKTTPEDILVKCISQNLGYN 293
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,443,152
Number of Sequences: 28952
Number of extensions: 322899
Number of successful extensions: 1005
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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