Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0041
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    25   0.44 
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    25   0.59 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.0  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    24   1.0  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   4.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   4.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   7.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   7.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   7.2  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 439 EYNGSLVIYYRIIRPYYQKHHGRT 510
           E N ++ +   +I P+Y  HHG T
Sbjct: 11  EQNNNVPVVLDVIPPHYNIHHGAT 34


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 146 GVNRLYIFLGLVAFTGLYLVFGFGAELICN 235
           GV ++YIF G +  +G+    G+    IC+
Sbjct: 86  GVVQIYIFSGFIVPSGVVYKIGYWLHQICH 115


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 282  LQSLHRHVRGYTKPIELHINSAPKPNTKYKP 190
            L++++R +RGY KP    I       TK KP
Sbjct: 2182 LRTINRVLRGYAKPDPKCILGRDNDKTKPKP 2212


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 50  SKLQEYKDNIEQSLNDKSK 106
           SKLQ+  DNIE  L+D ++
Sbjct: 118 SKLQQLVDNIEHKLSDPNQ 136


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 584 GKHYNFFDC 558
           GKHYN F C
Sbjct: 47  GKHYNIFAC 55


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 584 GKHYNFFDC 558
           GKHYN F C
Sbjct: 47  GKHYNIFAC 55


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -1

Query: 410 MHFNSQYNGNQPTMKSEKYSTIEKQAYTTQY 318
           MHF +QY  NQ      K++    Q     Y
Sbjct: 282 MHFPNQYQMNQEYRTDRKHTQQHYQMNQNMY 312


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -1

Query: 410 MHFNSQYNGNQPTMKSEKYSTIEKQAYTTQY 318
           MHF +QY  NQ      K++    Q     Y
Sbjct: 230 MHFPNQYQMNQEYRTDRKHTQQHYQMNQNMY 260


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -1

Query: 410 MHFNSQYNGNQPTMKSEKYSTIEKQAYTTQY 318
           MHF +QY  NQ      K++    Q     Y
Sbjct: 413 MHFPNQYQMNQEYRTDRKHTQQHYQMNQNMY 443


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,907
Number of Sequences: 336
Number of extensions: 4167
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)