Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0041
(692 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44) 120 1e-27
SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088) 34 0.095
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 31 0.67
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 31 0.89
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15) 29 2.7
SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13) 29 4.7
SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7) 28 6.2
SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_45400| Best HMM Match : MAM (HMM E-Value=0) 28 8.3
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_7842| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)
Length = 210
Score = 120 bits (288), Expect = 1e-27
Identities = 47/85 (55%), Positives = 65/85 (76%)
Frame = +1
Query: 253 PAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYL 432
PAY S+KA+ES QKDDDT+WL YWVV+A F+IVE+FSD ++ WFPLY+L K IF+ WC
Sbjct: 73 PAYQSVKAVESVQKDDDTQWLIYWVVFASFNIVEFFSDILLSWFPLYFLTKLIFLGWCMA 132
Query: 433 PTEYNGSLVIYYRIIRPYYQKHHGR 507
P +NGS +Y ++I+P+ +H +
Sbjct: 133 PVSWNGSDTLYQKVIKPFVLRHQSQ 157
Score = 59.7 bits (138), Expect = 2e-09
Identities = 28/62 (45%), Positives = 40/62 (64%)
Frame = +2
Query: 71 DNIEQSLNDKSKPWTKYFELAEQKVGVNRLYIFLGLVAFTGLYLVFGFGAELICNSIGFV 250
+N+E L +K+ +T E+K V +LY+FLGLV LYL+FG+GA+LI +GF
Sbjct: 13 ENLENWLEEKNY-FTDALGKVEEKTKVKKLYLFLGLVGVFSLYLIFGYGADLIVTVLGFA 71
Query: 251 YP 256
YP
Sbjct: 72 YP 73
>SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088)
Length = 110
Score = 34.3 bits (75), Expect = 0.095
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 253 PAYMSMKALESPQKDDDTKWLTYW 324
P Y S+ A+E+P + TKWL YW
Sbjct: 87 PVYASISAIENPDYEIGTKWLMYW 110
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 155 RLYIFLGLVAFTGLYLVFGFGAELICNSIGFVYP 256
R+ + L +V FT LY+ G+ A CN I V+P
Sbjct: 55 RIQVLL-MVLFTLLYVAEGYAAACFCNVIAVVFP 87
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 31.5 bits (68), Expect = 0.67
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = -3
Query: 543 LILFPCVGPYHRTTMMLL---VVRTNDTVVDHEGPVVFSRQVAPDHEDAL*QPVQWKPAD 373
+I P YHR ++L +V +VV H+ PVV R H+ + V +P
Sbjct: 1360 IIYHPPPEVYHRPDVVLHRPDIVIHRPSVVLHQAPVVVHRPAVVYHQPPV---VVHQPPP 1416
Query: 372 DEIGKVLHDRKTGVHHPICKPF 307
++H T V HP +PF
Sbjct: 1417 LVHQPIIHSHDTYVSHPFFEPF 1438
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 31.1 bits (67), Expect = 0.89
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 249 TKPIELHINSAPKPNTKYKPVNATKPKKMYNLFTPTFCSA 130
T+P+ H S+P+P + + PVN T P TP +A
Sbjct: 225 TQPLSSHSGSSPQPGSAFSPVN-TPPNAQAQQMTPPSSAA 263
>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
Length = 1724
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 134 RLVQNISSMACFCRSDFVLCCLYTLVIWMPL 42
R ++NI + C S F LCC + L W+ L
Sbjct: 100 RTLENIRARRCMRTSAFGLCCRFILAHWVKL 130
>SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1165
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 164 IFLGLVAFTGLYLVFGFGAELICNSIGFVY-PRTCL 268
I++ L + G VFGFGA L+ + + +V+ P CL
Sbjct: 1008 IYVRLASVMGFTWVFGFGAALLWSPLWYVFVPLNCL 1043
>SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)
Length = 1297
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 164 IFLGLVAFTGLYLVFGFGAELICNSIGFVY-PRTCL 268
I++ L A G VFGF AEL+ + +V+ P CL
Sbjct: 1198 IYVRLAAVMGFTWVFGFLAELLWTPLWYVFIPLNCL 1233
>SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 829
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 337 CFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIY 465
C ++V +G F +++ +C CY+P + NGS IY
Sbjct: 374 CVTVVHDPPFLKIGEFNIFYDKECTLEHVCYVPVQLNGSESIY 416
>SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7)
Length = 483
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 259 YMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCI 411
Y+ + + P+K D WL + + + YF + I +F WL KCI
Sbjct: 308 YLWGQDISDPRKFLDNTWLKVFKFQPLWKVKNYFGEQIALYFA--WLGKCI 356
>SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 259 YMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCI 411
Y+ + + P+K D WL + + + YF + I +F WL KCI
Sbjct: 122 YLWGQDISDPRKFLDNTWLKVFKFQPLWKVKNYFGEQIALYFA--WLGKCI 170
>SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 830
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 326 TQYVSHFVSSSFCGDSRAFI 267
T +V HFV + FCG++R+ +
Sbjct: 774 TAFVRHFVLARFCGENRSIV 793
>SB_45400| Best HMM Match : MAM (HMM E-Value=0)
Length = 257
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 406 CIFVIWCYLPTEYNGSLVIYYRIIRP 483
C+ + CY + YN + +YY +RP
Sbjct: 162 CVEAVGCYRDSGYNRAFPVYYADLRP 187
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/79 (22%), Positives = 34/79 (43%)
Frame = -3
Query: 273 LHRHVRGYTKPIELHINSAPKPNTKYKPVNATKPKKMYNLFTPTFCSASSKYFVHGLLLS 94
++ H K + +++ + P KP N KP Y+ T T+ S + + L +
Sbjct: 1262 IYLHREQIAKEVGINLMAFPDDVCSKKPCNYLKPNSYYDCNTYTYFSGEPQ-VLSSLKVV 1320
Query: 93 FRLCSMLSLYSCNLDAIVR 37
FR + ++C+ A R
Sbjct: 1321 FRTVPVDMKFNCSCPADYR 1339
>SB_7842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 29 LKDRTMASKLQEYKDNIEQSLNDKSKPWTKYFELAE-QKVGVNRLYIFLG 175
LKD+T ASK E + EQS+ K + K+ L + Q +Y F G
Sbjct: 43 LKDKTKASKATEKPEIFEQSVMGKVQTNIKFHNLEDRQDYRDESVYTFCG 92
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,819,400
Number of Sequences: 59808
Number of extensions: 522399
Number of successful extensions: 1728
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1721
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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