Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0041
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024201-6|AAF36016.1|  183|Caenorhabditis elegans Hypothetical ...   107   1e-23
Z81113-6|CAD21647.2|  295|Caenorhabditis elegans Hypothetical pr...    97   1e-20
AF045646-11|AAK29829.1|  205|Caenorhabditis elegans Hypothetical...    85   3e-17
U28412-5|AAC46595.1|  229|Caenorhabditis elegans Hypothetical pr...    70   2e-12
Z83128-7|CAB05634.2|  243|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U97403-3|AAB52473.1|  142|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF078157-18|AAG24080.1|  338|Caenorhabditis elegans Seven tm rec...    29   2.4  
U97010-1|AAB52322.1|  334|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81533-5|CAB04337.1|  342|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical...    28   7.3  
AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U97407-1|AAB52478.2|  411|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AC024201-6|AAF36016.1|  183|Caenorhabditis elegans Hypothetical
           protein Y71F9B.3 protein.
          Length = 183

 Score =  107 bits (256), Expect = 1e-23
 Identities = 44/84 (52%), Positives = 64/84 (76%)
 Frame = +1

Query: 253 PAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYL 432
           PAYMS+KA+ES  K+DDT+WLTYWV++A  S+VE+FS  IV  FP+YWL K IF+++ YL
Sbjct: 72  PAYMSIKAIESSNKEDDTQWLTYWVIFAILSVVEFFSVQIVAVFPVYWLFKSIFLLYLYL 131

Query: 433 PTEYNGSLVIYYRIIRPYYQKHHG 504
           P+ + G+  +Y+R ++P   +H G
Sbjct: 132 PS-FLGAAKLYHRFVKPVAARHSG 154



 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 29/68 (42%), Positives = 45/68 (66%)
 Frame = +2

Query: 53  KLQEYKDNIEQSLNDKSKPWTKYFELAEQKVGVNRLYIFLGLVAFTGLYLVFGFGAELIC 232
           ++Q+  D++++ L++ S   T      EQK GV RL++ LG+V    LYL+FG  A+L+C
Sbjct: 6   QVQKVLDDVDKQLHEPSTV-TNVLATVEQKTGVKRLHLVLGVVGLQALYLIFGHSAQLVC 64

Query: 233 NSIGFVYP 256
           N +GFVYP
Sbjct: 65  NFMGFVYP 72


>Z81113-6|CAD21647.2|  295|Caenorhabditis elegans Hypothetical
           protein T03F6.6 protein.
          Length = 295

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 57/148 (38%), Positives = 90/148 (60%), Gaps = 7/148 (4%)
 Frame = +1

Query: 253 PAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYL 432
           PAY+S+KA+ +   DDDT WL YW V+  FSI+++F+  I+ +FP+YW+ K  F+++ YL
Sbjct: 89  PAYVSVKAIRTEGTDDDTMWLIYWTVFGAFSIIDFFAASIMSYFPIYWVAKAAFLLYLYL 148

Query: 433 PTEYNGSLVIYYRIIRPYYQKHHGRTM---IWANTG--KQD*NAVLMQSKKL*CFP-SGG 594
           P E +GS VIY+++I P+   H  ++M   + AN G    D  + L  +  + C P S  
Sbjct: 149 P-ETHGSHVIYHQLIDPFV-AHMEKSMSRKLPANAGTVPNDQGSALDANNNINCLPFSIF 206

Query: 595 QIPSEKTN-*TCSFFTYVLNKI*IVQIS 675
           +  + K N  TC  F ++L  I ++QIS
Sbjct: 207 KFLNSKFNMKTC--FIFMLLLIALIQIS 232



 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 134 EQKVGVNRLYIFLGLVAFTGLYLVFGFGAELICNSIGFVYP 256
           E   G+ R  +  GL+    +Y++ G GAE +CN IG  YP
Sbjct: 49  EDATGLKREMLAYGLIGLNCVYMIIGSGAEFVCNLIGVAYP 89


>AF045646-11|AAK29829.1|  205|Caenorhabditis elegans Hypothetical
           protein F56B3.6 protein.
          Length = 205

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 34/77 (44%), Positives = 51/77 (66%)
 Frame = +1

Query: 253 PAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYL 432
           P Y S+KA+ SP  DDDT WL YW  +A   +V++FS+ I+ WFP Y++ K  F+++ YL
Sbjct: 112 PTYASVKAIRSPGGDDDTVWLIYWTCFAVLYLVDFFSEAILSWFPFYYIAKACFLVYLYL 171

Query: 433 PTEYNGSLVIYYRIIRP 483
           P +  GS++ Y  I+ P
Sbjct: 172 P-QTQGSVMFYETIVDP 187



 Score = 36.3 bits (80), Expect = 0.021
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +2

Query: 161 YIFLGLVAFTGLYLVFGFGAELICNSIGFVYP 256
           Y   GL+AF   +LVFG  A L+CN IGF YP
Sbjct: 84  YAAFGLIAF---FLVFGSVARLLCNLIGFGYP 112


>U28412-5|AAC46595.1|  229|Caenorhabditis elegans Hypothetical
           protein T19C3.4 protein.
          Length = 229

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
 Frame = +1

Query: 253 PAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVG-WFPLYWLLKCIFVIWCY 429
           PAY S KA+ +    +  KW+ YW+V+A +S +E   D ++  WFP Y+ LK +F+ W  
Sbjct: 18  PAYRSYKAVRTKDTREYVKWMMYWIVFAIYSFLENLLDLVLAFWFPFYFQLKIVFIFWLL 77

Query: 430 LPTEYNGSLVIYYRIIRPYYQKH 498
            P    G+ ++Y + + P   +H
Sbjct: 78  SPWT-KGASILYRKWVHPTLNRH 99


>Z83128-7|CAB05634.2|  243|Caenorhabditis elegans Hypothetical
           protein W01D2.3 protein.
          Length = 243

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +1

Query: 244 LRVPAYMSMKALESPQ--KDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFV 417
           + V A  S  + E+P   K+    ++ YW VYA F   E F   ++ W     L + IF+
Sbjct: 135 MTVTAISSTSSYENPSFLKNHQDFFVRYWTVYAVFVTGESFLSSLIHWD--LRLFRLIFM 192

Query: 418 IWC 426
             C
Sbjct: 193 SMC 195


>U97403-3|AAB52473.1|  142|Caenorhabditis elegans Hypothetical
           protein T10E9.6 protein.
          Length = 142

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 319 YWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLP 435
           YW ++  F    Y  D I+ + PLY+++K    I  +LP
Sbjct: 91  YWTIFGFF----YLFDRILEYIPLYYIIKLAVFIGLFLP 125


>AF078157-18|AAG24080.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 28 protein.
          Length = 338

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +1

Query: 322 WVVYACFSIVEYFSDFIVGWFPLYWLLKCIFV--IWCY 429
           ++  AC      +S    GW  +YWLL C+ +  +W Y
Sbjct: 110 FIYRACVLARPIWSKIFDGWKLIYWLLYCLIIGGLWSY 147


>U97010-1|AAB52322.1|  334|Caenorhabditis elegans Hypothetical
           protein W08A12.4 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 510 DDMGQHRETRLKCRFNAIKKIIMLPVWWADTIRKDQLNLL 629
           ++  Q R+  +  +F  IKKI+ + V W DTI ++  N L
Sbjct: 172 NEEAQQRQREMNRQFEEIKKIMQMRV-WNDTIERNWTNRL 210


>Z81533-5|CAB04337.1|  342|Caenorhabditis elegans Hypothetical
           protein F36G9.8 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -3

Query: 180 TKPKKMYNLFTPTFCSASSKYFVHGLLLSFRLCSMLSLYSCNLDAIVRSFSG*P 19
           T P  ++ ++   FC           LL F++CSM S +  N+  +   FS  P
Sbjct: 21  TTPVNIFGVYVILFCQTKQLASYRWHLLVFQVCSMTSDFLLNIGMLPVIFSPFP 74


>AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical
            protein Y6B3A.1a protein.
          Length = 1628

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 376  GWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRPYYQKHHG 504
            GWFP+++ L CI +  C L      SL + + I+     KHHG
Sbjct: 1221 GWFPIFFELSCI-INRCKLDVR-TRSLTVMFEIM-----KHHG 1256


>AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical
            protein Y6B3A.1a protein.
          Length = 1628

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 376  GWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRPYYQKHHG 504
            GWFP+++ L CI +  C L      SL + + I+     KHHG
Sbjct: 1221 GWFPIFFELSCI-INRCKLDVR-TRSLTVMFEIM-----KHHG 1256


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 243 PIELHINSAPK-PNTKYKPVNATKPKKMYNLF-TPTFCSASS 124
           P  + +N+ P  PNTK  P N T   ++  LF  P+ CS  S
Sbjct: 516 PAMMAVNTPPATPNTKEAPTNCTSLLQVPRLFDCPSPCSVPS 557


>U97407-1|AAB52478.2|  411|Caenorhabditis elegans Hypothetical
           protein C34G6.5 protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 176 SLRKCTICSRRPFVRLVQNISSMACFCRSDF 84
           S + CTIC +R F     N S   CFCR ++
Sbjct: 323 SRQPCTICQKRSF-----NNSMGVCFCRKNY 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,046,440
Number of Sequences: 27780
Number of extensions: 395976
Number of successful extensions: 1199
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)