Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0040
         (493 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   2.0  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   4.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   6.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   6.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   6.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   6.1  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   8.0  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 231 AFFXIGISPVAWPMXNP 281
           AFF  G+ P+AW   +P
Sbjct: 55  AFFHPGLLPLAWQANSP 71


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 239 EKRIFNLQISLFNLLLINFATLLKKNCV 156
           +K+IF+  +     ++ NFA L+   CV
Sbjct: 107 QKKIFDESVIFERKVMKNFAILIIPTCV 134


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 374 CIVERLWMDSLXPTFRSER 318
           C++   W+  L   FRS R
Sbjct: 134 CLIFAFWVPQLGSLFRSSR 152


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 374 CIVERLWMDSLXPTFRSER 318
           C++   W+  L   FRS R
Sbjct: 134 CLIFAFWVPQLGSLFRSSR 152


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 374 CIVERLWMDSLXPTFRSER 318
           C++   W+  L   FRS R
Sbjct: 134 CLIFAFWVPQLGSLFRSSR 152


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 374 CIVERLWMDSLXPTFRSER 318
           C++   W+  L   FRS R
Sbjct: 134 CLIFAFWVPQLGSLFRSSR 152


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 331 LDRNARQLRSRLVV 290
           LDR+ R+L SRL V
Sbjct: 76  LDRSLRKLNSRLFV 89


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,271
Number of Sequences: 336
Number of extensions: 1855
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11525470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)