Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0040
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    26   3.5  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    25   8.2  

>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 251 DANXEKRIFNLQISLFNLLLINFATLLKKNCVLSRENEMFFQFKS 117
           D N    + N+Q+S F+L    F T+L K+     EN  FF + S
Sbjct: 210 DTNPSLWVRNVQLSFFSLFPCLF-TILMKDYHNIAENGFFFGYNS 253


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -1

Query: 406 INLXTKFVDSSAL*NGYGWTLWXQLLDRNARQLRSRLVVPTCGXLIGHATGLMPXQK 236
           ++    ++D S++ N Y  +   + L  +  +L+   VV TCG +IG   G    Q+
Sbjct: 38  VSYFINYLDRSSINNAY-LSGMQEDLKMHGNELQDINVVFTCGYIIGQLPGSYALQR 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,740,013
Number of Sequences: 5004
Number of extensions: 29530
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)