Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0040
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0211 - 6436275-6436361,6436969-6437235,6438475-6438543,643...    28   3.5  

>03_02_0211 -
           6436275-6436361,6436969-6437235,6438475-6438543,
           6439108-6439236,6439319-6439480,6439558-6439678,
           6439813-6439928,6440697-6440762,6441010-6441091,
           6441236-6441327,6441430-6441537,6441919-6442013,
           6442092-6442234,6442336-6442364,6442452-6442571,
           6442645-6442734,6443116-6443181,6443267-6443380,
           6443482-6443574
          Length = 682

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 215 ISLFNLLLINFATLLKKNCVLSRENEMFFQFKSSLCHSPDLXMSL 81
           I L +  L    +LLKK  V S   ++F    +S CHSP   +SL
Sbjct: 450 ILLTSTELAELRSLLKKTLVDSCGKDLFQSLYASWCHSPMATISL 494


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,827,460
Number of Sequences: 37544
Number of extensions: 175289
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)