Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0040
         (493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24605| Best HMM Match : HNOB (HMM E-Value=0)                        27   6.4  
SB_21487| Best HMM Match : MAM (HMM E-Value=0)                         27   8.4  

>SB_24605| Best HMM Match : HNOB (HMM E-Value=0)
          Length = 676

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 188 NFATLLKKNCVLSRENEMFFQ-FKSSLCHSPDLXMSLFKNHVKMLL 54
           +F T+  K  V     E+FF  F  SL  SPD+ +S+F N ++ LL
Sbjct: 202 DFLTVGTKKAV---STEVFFSIFPFSLVISPDMTLSMFGNGLQSLL 244


>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
          Length = 874

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 364 NGYGWTLWXQLLDRNARQLRSRLVVPT 284
           NG GW ++ +  D N    ++RLV PT
Sbjct: 246 NGTGWYIYIETSDPNREGNKARLVSPT 272


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,848,405
Number of Sequences: 59808
Number of extensions: 214006
Number of successful extensions: 349
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)