Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0040
         (493 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127482-1|BAC86999.1| 1085|Homo sapiens protein ( Homo sapiens ...    29   6.6  
AB007859-1|BAA23695.4| 2982|Homo sapiens KIAA0399 protein protein.     29   6.6  

>AK127482-1|BAC86999.1| 1085|Homo sapiens protein ( Homo sapiens cDNA
            FLJ45574 fis, clone BRTHA3011187. ).
          Length = 1085

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 230  IFNLQISLFNLLLINFATLLKKNCVLSRENEMFFQFKSSLCHSPD 96
            +F++      + L++F TL   +CVL RE  +  +    LC  P+
Sbjct: 1030 VFSMAARQLVIFLLDFCTLDIPHCVLLREFSVLTELLKKLCSGPE 1074


>AB007859-1|BAA23695.4| 2982|Homo sapiens KIAA0399 protein protein.
          Length = 2982

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 230  IFNLQISLFNLLLINFATLLKKNCVLSRENEMFFQFKSSLCHSPD 96
            +F++      + L++F TL   +CVL RE  +  +    LC  P+
Sbjct: 1050 VFSMAARQLVIFLLDFCTLDIPHCVLLREFSVLTELLKKLCSGPE 1094


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,410,354
Number of Sequences: 237096
Number of extensions: 1037372
Number of successful extensions: 1077
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4423060356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)