Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0040
         (493 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF172329-1|AAF02618.1| 3579|Drosophila melanogaster starry night...    29   4.5  

>AF172329-1|AAF02618.1| 3579|Drosophila melanogaster starry night
           protein protein.
          Length = 3579

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
 Frame = -3

Query: 431 LDVNRYRX---HQSRX*VRGLE-CIVERLWMDSLXPTFRSERETATK*VGRAYVRIXHRP 264
           LDVN  R    HQSR  V   + CI E +W  S+    R +R        R  +   H+ 
Sbjct: 279 LDVNDERFAIEHQSRDLVASRDVCIAESMWKVSITFNIRCDRRDIVDSDHRLKIVYHHQE 338

Query: 263 CHRTD-ANXEKRIFNLQISLFNLLL 192
            + TD A   +R    Q   F L L
Sbjct: 339 FNDTDIARRVRRELRNQSPYFELAL 363


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,147,980
Number of Sequences: 53049
Number of extensions: 299921
Number of successful extensions: 429
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1721789184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)