Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0040
         (493 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26210.2 68417.m03774 mitochondrial ATP synthase g subunit fa...    27   6.9  
At4g26210.1 68417.m03773 mitochondrial ATP synthase g subunit fa...    27   6.9  
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ...    27   9.1  
At4g15070.1 68417.m02315 DC1 domain-containing protein contains ...    27   9.1  

>At4g26210.2 68417.m03774 mitochondrial ATP synthase g subunit
           family protein contains Pfam profile: PF04718
           mitochondrial ATP synthase g subunit
          Length = 122

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 406 INLXTKFVDSSAL*NGYGWTLWXQLLDRNARQLRSRLVVPTCGXL 272
           + L +K  ++S   + +G T + QLLD+N   ++    +  C  L
Sbjct: 6   LQLKSKACEASKFVSKHGTTYYKQLLDKNKMYIQEPATIEKCNEL 50


>At4g26210.1 68417.m03773 mitochondrial ATP synthase g subunit
           family protein contains Pfam profile: PF04718
           mitochondrial ATP synthase g subunit
          Length = 122

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 406 INLXTKFVDSSAL*NGYGWTLWXQLLDRNARQLRSRLVVPTCGXL 272
           + L +K  ++S   + +G T + QLLD+N   ++    +  C  L
Sbjct: 6   LQLKSKACEASKFVSKHGTTYYKQLLDKNKMYIQEPATIEKCNEL 50


>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 977

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 21  CVCXXICHCETKQHFNMI 74
           CVC  + HC T + FN I
Sbjct: 820 CVCKELGHCSTNETFNCI 837


>At4g15070.1 68417.m02315 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 889

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 21  CVCXXICHCETKQHFNMI 74
           CVC  + HC T + FN I
Sbjct: 785 CVCKELGHCSTNETFNCI 802


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,981,221
Number of Sequences: 28952
Number of extensions: 149779
Number of successful extensions: 255
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)