Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0039
         (691 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    42   0.014
UniRef50_A7EK66 Cluster: Putative uncharacterized protein; n=1; ...    35   1.6  
UniRef50_A6S9H7 Cluster: Putative uncharacterized protein; n=2; ...    34   3.8  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 41.9 bits (94), Expect = 0.014
 Identities = 21/32 (65%), Positives = 22/32 (68%)
 Frame = +2

Query: 2   RSDGKVIEPLLLLGLTLANSHRLSPLSSPTCP 97
           RSDG+  E LLLLGL LANS RLSP   P  P
Sbjct: 88  RSDGRFCEALLLLGLVLANSLRLSPYELPNRP 119


>UniRef50_A7EK66 Cluster: Putative uncharacterized protein; n=1;
           Sclerotinia sclerotiorum 1980|Rep: Putative
           uncharacterized protein - Sclerotinia sclerotiorum 1980
          Length = 2208

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 221 KXLGIVCVYEHICHNVFQKILSYCIAFIAGLERGDRIMKFHNE 349
           K   +VC++EH  +N  QK++ Y  A+  G + G+R   F N+
Sbjct: 170 KGFNVVCIFEHPGNNYLQKMVDYGPAWYKGRKVGNRHEAFRND 212


>UniRef50_A6S9H7 Cluster: Putative uncharacterized protein; n=2;
           Pezizomycotina|Rep: Putative uncharacterized protein -
           Botryotinia fuckeliana B05.10
          Length = 366

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 233 IVCVYEHICHNVFQKILSYCIAFIAGLERGDRIMKFHNE 349
           +VC++EH  +N  QK++ Y  A+  G + GDR   F ++
Sbjct: 173 VVCIFEHPGYNYLQKMVDYGPAWYKGRKVGDRHEAFRDD 211


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 577,719,988
Number of Sequences: 1657284
Number of extensions: 9695010
Number of successful extensions: 17624
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17618
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)