Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0039
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    25   7.8  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.8  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   7.8  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    25   7.8  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -1

Query: 520 PSHSKLDRARERWTDFSRCACSVTSRHALIHKHYTSATCECVERELHGR 374
           P+H ++  + +    F    C V  R   I KH    T E  E+ L  R
Sbjct: 143 PTHGEMSNSIDYRIMFGPDKCGVNDRVHFIFKHKNPLTGEYSEKHLDSR 191


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 508 LSVKGTVNVLLLLMFN-IARSCFIIVLILNYHCLIIICI 621
           LS+ G +NV LLL+F+ + R      +IL   CL I+C+
Sbjct: 323 LSLAGIINVPLLLIFSYLTRYLTDRDIILLGCCLNIVCM 361


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 460 CSVTSRHALIHKHYTSATC 404
           CS+   H+L+ K Y S +C
Sbjct: 285 CSILQLHSLVEKKYVSLSC 303


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +3

Query: 486 LSLARSSFECEGDS*CFAFINV---*YSAVLFYYCINIKLSLSNYNLHKLIK 632
           LS     F+C+ D  C++ I V    ++ V+F+  +   LSL N      IK
Sbjct: 73  LSAGYLQFDCQNDGKCYSVIAVHRLSFTLVMFHLFLAFILSLCNTRSRVAIK 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,983
Number of Sequences: 5004
Number of extensions: 43307
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)