Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0039
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23344| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_9667| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  

>SB_23344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 469 RCACSVTSRHALIHKHYTSATCECVERELHGRR 371
           R A S TSR      H++    ECV+RE+   R
Sbjct: 192 RSAISFTSRDIFGKSHFSGIPAECVQREVKSAR 224


>SB_9667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 442 HALIHKHYTSATCECVERELH 380
           HAL  KH+ + T EC++  LH
Sbjct: 50  HALTSKHFCNGTDECMDLSLH 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,329,009
Number of Sequences: 59808
Number of extensions: 324375
Number of successful extensions: 659
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)