Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0038
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0182 - 18196447-18196482,18197058-18197149,18197262-18197544     54   1e-07
03_06_0504 - 34394442-34394729                                         52   3e-07
06_01_0725 + 5305839-5306279,5306816-5307028,5307229-5307675,530...    32   0.38 
09_04_0131 + 14917239-14918510,14918803-14918895                       29   2.7  

>03_04_0182 - 18196447-18196482,18197058-18197149,18197262-18197544
          Length = 136

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 24/57 (42%), Positives = 38/57 (66%)
 Frame = +1

Query: 64  TSERNAQVGQARETFQLIHQISQLLNTGLDVEALSTCIRLCELGVDPEVLAHVIKEI 234
           T   +A   QA+E+ +L  Q+SQ+L+TGLD   LS  + LC+ G +PE LA +++E+
Sbjct: 8   TGTESAAARQAKESLELAFQMSQILDTGLDRHTLSLLMALCDRGANPEALAALVREL 64


>03_06_0504 - 34394442-34394729
          Length = 95

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 23/53 (43%), Positives = 37/53 (69%)
 Frame = +1

Query: 76  NAQVGQARETFQLIHQISQLLNTGLDVEALSTCIRLCELGVDPEVLAHVIKEI 234
           +A   QA+E+ +L  Q+SQ+L+TGLD   LS  + LC+ G +PE LA +++E+
Sbjct: 5   SAAARQAKESLELAFQMSQILDTGLDRHTLSLLMALCDRGANPEALAALVREL 57


>06_01_0725 +
           5305839-5306279,5306816-5307028,5307229-5307675,
           5307768-5307917,5308185-5308486,5309718-5309758,
           5311294-5311968,5312343-5312386
          Length = 770

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 87  RPSAGNLSINPPDITTPQHGAGRGSTVNLH 176
           RPSA ++S  P D   P +GAG G+ + LH
Sbjct: 604 RPSALSISPPPHDADAPSYGAGAGAPLQLH 633


>09_04_0131 + 14917239-14918510,14918803-14918895
          Length = 454

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 124 ISQLLNTGLDVEALSTCIRLCELGVDPEVLAH 219
           I +   +G   EAL TC R+ E+GV+P V+ +
Sbjct: 222 IDEYCKSGNLDEALVTCTRMSEVGVEPNVVTY 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,619,056
Number of Sequences: 37544
Number of extensions: 284256
Number of successful extensions: 674
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)