Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0038
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32629| Best HMM Match : V-ATPase_G (HMM E-Value=3.3) 31 0.67
SB_28280| Best HMM Match : V-ATPase_G (HMM E-Value=3.3) 31 0.67
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053) 30 2.1
SB_15481| Best HMM Match : FlaG (HMM E-Value=5.9) 29 2.7
SB_28923| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 29 4.8
SB_35384| Best HMM Match : PRA1 (HMM E-Value=6.7) 28 6.3
SB_34800| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07) 28 8.3
SB_54921| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_32303| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_32629| Best HMM Match : V-ATPase_G (HMM E-Value=3.3)
Length = 114
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/72 (22%), Positives = 33/72 (45%)
Frame = +1
Query: 52 TTNMTSERNAQVGQARETFQLIHQISQLLNTGLDVEALSTCIRLCELGVDPEVLAHVIKE 231
T T + + E + +HQ++ L G+D + L + L L V P+ + +++
Sbjct: 40 TAFTTESARIEADEEVEIDENLHQLANLGGVGMDRDVLENVLELIRLNVHPDKIMDMLEI 99
Query: 232 IRKMGENVKKHL 267
I K E ++ +
Sbjct: 100 IVKFREQEEQEI 111
>SB_28280| Best HMM Match : V-ATPase_G (HMM E-Value=3.3)
Length = 114
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/72 (22%), Positives = 33/72 (45%)
Frame = +1
Query: 52 TTNMTSERNAQVGQARETFQLIHQISQLLNTGLDVEALSTCIRLCELGVDPEVLAHVIKE 231
T T + + E + +HQ++ L G+D + L + L L V P+ + +++
Sbjct: 40 TAFTTESARIEADEEVEIDENLHQLANLGGVGMDRDVLENVLELIRLNVHPDKIMDMLEI 99
Query: 232 IRKMGENVKKHL 267
I K E ++ +
Sbjct: 100 IVKFREQEEQEI 111
>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
Length = 1152
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 63 DIGEERSSRPSAGNLSINPPDITTPQHGAGRGSTVNLHQT 182
+I + SSR + GN I D + PQ G+ N HQT
Sbjct: 384 EIEPQTSSRTTIGNTEIRESDASIPQGGSISQCAANPHQT 423
>SB_15481| Best HMM Match : FlaG (HMM E-Value=5.9)
Length = 272
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +1
Query: 58 NMTSERNAQVGQARETFQLIHQISQLLNTGLD--VEALSTCIRLCELGVDPEVLAHVIKE 231
N T+E + G + F+ +H +N + E+ T I + + D E+LA+V+ +
Sbjct: 48 NTTAENGSATGMKSQVFRKLHGDPSTINKPFNHKSESNKTIISVYRM-CDMEILANVLSD 106
Query: 232 IRKMGENVKK 261
+R VKK
Sbjct: 107 VRWCKYQVKK 116
>SB_28923| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 157 EALSTCIRLCELGVDPEVL-AHVIKEIRKMGENVKKHLIYKHR*SQLSEIY 306
EA+ C++L E + ++ AH +KEI K+ HL+ K++ E+Y
Sbjct: 6 EAIDCCVQLNEWDLAIQLAKAHDVKEIDKLLAKYASHLLEKNKTLNAIELY 56
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +1
Query: 346 FKSILDLSYFNA---PNISRYEIPQYLNKNKCLFSCTL 450
F +I D+ + +A P R +IPQ L + +F+CTL
Sbjct: 2426 FTNIADIQFLSAMIHPGGGRNDIPQRLKRQFLIFNCTL 2463
>SB_35384| Best HMM Match : PRA1 (HMM E-Value=6.7)
Length = 654
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +1
Query: 346 FKSILDLSYFNA---PNISRYEIPQYLNKNKCLFSCTL 450
F SI+D+ + +A P R +IP L + +F+CTL
Sbjct: 367 FTSIVDIQFISAMIQPGGGRNDIPSRLKRQFTVFNCTL 404
>SB_34800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Frame = +1
Query: 223 IKEIRKMGENVKKHLIYK-------HR*SQLSEIYNHEFPNKQMTRMIFKSILDLSYFNA 381
I +++K GE KK + ++ ++ Q + Y ++ + ++FKS + SYF
Sbjct: 166 IDKVKKEGETSKKGVTFEMPDARDANKLVQATNFYIYKVMAAAVDALMFKSDANESYFTN 225
Query: 382 PNISRYEIPQYLNKNK 429
PN+ R +Y + K
Sbjct: 226 PNLYRQRWVKYFDHVK 241
>SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07)
Length = 438
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Frame = +1
Query: 223 IKEIRKMGENVKKHLIYK-------HR*SQLSEIYNHEFPNKQMTRMIFKSILDLSYFNA 381
I +++K GE KK + ++ ++ Q + Y ++ + ++FKS + SYF
Sbjct: 272 IDKVKKEGETGKKGVTFEMPDARDANKLVQATNFYIYKVMATAVDALMFKSNANESYFTN 331
Query: 382 PNISRYEIPQYLNKNK 429
PN+ R +Y + K
Sbjct: 332 PNLYRQRWVKYFDHVK 347
>SB_54921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Frame = +1
Query: 223 IKEIRKMGENVKKHLIYK-------HR*SQLSEIYNHEFPNKQMTRMIFKSILDLSYFNA 381
I +++K GE KK + ++ ++ Q + Y ++ + ++FKS + SYF
Sbjct: 29 IGKVKKEGETSKKGVTFEMPDARDANKLVQATNFYIYKVMATAVDALMFKSDANESYFTN 88
Query: 382 PNISRYEIPQYLNKNK 429
PN+ R +Y + K
Sbjct: 89 PNLYRQRWVKYFDHVK 104
>SB_32303| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 226 KEIRKMGENVKKHLIYKHR*SQLSEIYNHEFPNKQMTRM 342
K++RK+ ENV +H + + ++ I + E P K + R+
Sbjct: 96 KQLRKLAENVVQHYMERIERAEKRSIASTETPQKGLNRL 134
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,813,445
Number of Sequences: 59808
Number of extensions: 353384
Number of successful extensions: 724
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -