Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0038
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97008-9|AAB52314.2|  434|Caenorhabditis elegans Cytochrome p450...    31   0.60 
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical...    30   1.8  
Z48717-4|CAA88607.1|  515|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U80033-1|AAM15607.1|  381|Caenorhabditis elegans Synaptotagmin p...    28   5.5  

>U97008-9|AAB52314.2|  434|Caenorhabditis elegans Cytochrome p450
           family protein 35A1 protein.
          Length = 434

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = +1

Query: 52  TTNMTSERNAQVGQARETFQLIHQISQLLNTGLDVEALSTCIRLCELGVDPEVLAHVIKE 231
           TT  T++R A     +    L   I  L  TG +    +      +L + PEV+    +E
Sbjct: 207 TTQNTAKRFAAAEAVKSIETLKTMIIDLWMTGQETTTTTLISGFTQLLLHPEVMVKAREE 266

Query: 232 IRKMGENVKKHL 267
           I K+ EN  +HL
Sbjct: 267 ILKITENGSRHL 278


>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
            protein Y71F9AL.17 protein.
          Length = 1232

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
 Frame = +1

Query: 49   KTTNMTSERNAQVGQARETFQL--IHQISQL---LNTGLDVEALSTCIRLC----ELGVD 201
            KT    ++RNA++      F+L  +H+I  L   +NT   ++ + TC  LC    EL   
Sbjct: 1084 KTNLEDAKRNAELAAYFTHFELQPMHRILTLRSAINTFFKMKQMKTCASLCKRLLELAPK 1143

Query: 202  PEVLAHVIK 228
            PEV A + K
Sbjct: 1144 PEVAAQIRK 1152


>Z48717-4|CAA88607.1|  515|Caenorhabditis elegans Hypothetical
           protein T10B9.7 protein.
          Length = 515

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 67  SERNAQVGQARETFQLIHQISQLLNTGLDVEALSTCIRLCELGVDPEVLAHVIKEIRK 240
           S+RN ++ +     +++ Q    L  G D  ALS       L V+P++   VI+EI +
Sbjct: 298 SKRNLKITKELSADEVVGQCFLFLIGGFDTTALSLSYVTYLLAVNPKIQEKVIEEIAR 355


>U80033-1|AAM15607.1|  381|Caenorhabditis elegans Synaptotagmin
           protein 4 protein.
          Length = 381

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +1

Query: 199 DPEVLAHVIKEIRKMGENVKKHLIYKHR*SQLSEIYNHEFPNKQMTRMIFKSILDLSYFN 378
           DP V  ++ KE    GE + K   +  R S L+ +YN  F  +     +  S++DL   N
Sbjct: 286 DPFVKLYLRKE---SGERIVKKRTHVRR-STLNPVYNESFVFELPDDRLEHSVIDLQVIN 341

Query: 379 APNISRYEI 405
              ++R ++
Sbjct: 342 HDRVNRNDV 350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,522,583
Number of Sequences: 27780
Number of extensions: 279238
Number of successful extensions: 689
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)