Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0038
(696 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g09550.1 68417.m01569 expressed protein 60 2e-09
At1g73790.1 68414.m08543 expressed protein 56 2e-08
At5g46200.1 68418.m05684 expressed protein contains similarity t... 31 0.96
At1g21540.1 68414.m02694 AMP-binding protein, putative strong si... 30 1.3
At5g35917.1 68418.m04317 cytochrome P450, putative similar to Cy... 29 2.9
At3g26160.1 68416.m03263 cytochrome P450 family protein similar ... 28 5.1
At3g26150.1 68416.m03262 cytochrome P450 71B16, putative (CYP71B... 28 6.8
At5g56790.1 68418.m07087 protein kinase family protein contains ... 27 9.0
At3g26300.1 68416.m03282 cytochrome P450 family protein contains... 27 9.0
>At4g09550.1 68417.m01569 expressed protein
Length = 71
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/49 (53%), Positives = 38/49 (77%)
Frame = +1
Query: 94 ARETFQLIHQISQLLNTGLDVEALSTCIRLCELGVDPEVLAHVIKEIRK 240
ARE+ +L+ ++S +L+TGLD LS I LC+LGV+PE LA V+KE+R+
Sbjct: 9 ARESLELVFRMSNILDTGLDRHTLSVLIALCDLGVNPEALATVVKELRR 57
>At1g73790.1 68414.m08543 expressed protein
Length = 67
Score = 56.0 bits (129), Expect = 2e-08
Identities = 23/49 (46%), Positives = 37/49 (75%)
Frame = +1
Query: 94 ARETFQLIHQISQLLNTGLDVEALSTCIRLCELGVDPEVLAHVIKEIRK 240
ARE+ +L+ ++S +L TGLD LS I LC++G++PE LA ++KE+R+
Sbjct: 9 ARESLELVFRMSNILETGLDRHTLSVLIALCDIGLNPEALATLVKELRR 57
>At5g46200.1 68418.m05684 expressed protein contains similarity to
carboxyl-terminal proteinase contains Pfam profile
PF03080: Arabidopsis proteins of unknown function;
expression supported by MPSS
Length = 408
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 313 EFPNKQMTRMIFKSILD--LSYFNAPNISRYEIPQYLNKNKC 432
EFP K ++R F L LS ++ +I+ E+ QY++ KC
Sbjct: 341 EFPTKDLSRSCFMKQLKYVLSDYSVVDINANEVEQYVDSRKC 382
>At1g21540.1 68414.m02694 AMP-binding protein, putative strong
similarity to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501; identical to cDNA adenosine monophosphate
binding protein 9 AMPBP9 (AMPBP9) GI:20799726
Length = 550
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +1
Query: 136 LNTGLDVEALSTCIRLCE---LGVDPEVLAHVIKEIRKMGENVKKHLI 270
+N LD ALS +R E + VDP ++ V++ + M +N K HL+
Sbjct: 97 INPRLDAHALSVLLRHSESKLVFVDPNSISVVLEAVSFMRQNEKPHLV 144
>At5g35917.1 68418.m04317 cytochrome P450, putative similar to
Cytochrome P450 79A2 (SP:Q9FLC8) {Arabidopsis thaliana}
Length = 490
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = +1
Query: 31 SIPEV*KTTNMTSERNAQVGQARETFQLIHQISQLLNTGLDVEALSTCIRLCELGVDPEV 210
S+P K+ + +G+ + F+ IH + + LNT + CIRL V P
Sbjct: 41 SLPPGPKSWPLVGNLPEILGRNKPVFRWIHSLMEELNTDI------ACIRLANTHVIPVT 94
Query: 211 LAHVIKEIRKMGENV 255
+ +EI K ++V
Sbjct: 95 SPRIAREILKKQDSV 109
>At3g26160.1 68416.m03263 cytochrome P450 family protein similar to
cytochrome P450 GB:O65784 [Arabidopsis thaliana]
Length = 502
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 124 ISQLLNTGLDVEALSTCIRLCELGVDPEVLAHVIKEIR-KMGEN 252
++ ++ G+D AL+ + EL +PE++ V EIR ++G N
Sbjct: 298 LTNIIIAGIDTGALTMIWTMTELARNPEIMKKVQGEIRDRLGNN 341
>At3g26150.1 68416.m03262 cytochrome P450 71B16, putative (CYP71B16)
identical to cytochrome P450 71B16 (SP:Q9LTM7)
[Arabidopsis thaliana]; similar to cytochrome P450
GB:O65784 [Arabidopsis thaliana]
Length = 502
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 124 ISQLLNTGLDVEALSTCIRLCELGVDPEVLAHVIKEIRKMGENVKKHL 267
++ ++ G+D AL+ + EL +PE++ +V EIR N K+ +
Sbjct: 298 LTNIIIAGIDTGALTMIWAMTELARNPELMKNVQGEIRDSFGNNKERI 345
>At5g56790.1 68418.m07087 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 669
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 472 MLVFKCITKCKRIDIYFYLNIGVFHTYLY 386
ML+ C+ KR+ +Y Y+ G H++LY
Sbjct: 448 MLIGLCVEDGKRLLVYEYICNGSLHSHLY 476
>At3g26300.1 68416.m03282 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 500
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 124 ISQLLNTGLDVEALSTCIRLCELGVDPEVLAHVIKEIRKMGENVKK 261
+ +L G+D A++ + EL +P V+ V EIR +N ++
Sbjct: 295 LMDVLLAGMDTSAITMTWAMAELAKNPRVMKKVQSEIRSQIKNKER 340
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,376,106
Number of Sequences: 28952
Number of extensions: 250013
Number of successful extensions: 584
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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