Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0037
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    28   1.5  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    28   1.5  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    26   5.9  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    25   7.9  
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    25   7.9  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +3

Query: 582  AVRV-LHSTHLYRRRYG-LQCRISSGFSNKRIKILHSV 689
            A+R+ L+S   Y+  YG LQ  I S FSN+ +KIL+ +
Sbjct: 1298 AIRLDLYSRDEYQDEYGVLQEEIESTFSNRFLKILNRI 1335


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 107 LFTEATNKKAMWITLGVFTVQQFCGSAAVVAYSQFIF 217
           LFT  +N+++++I   +   QQF G+ A+  +S  IF
Sbjct: 323 LFTVPSNRRSLFIGCFLQWFQQFSGTNAIQYFSAIIF 359



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = +1

Query: 298 SIIIGCVQVATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTIGTYFYFY--DTNKQAVQN 471
           SI++G       I++ + +DR+GR+                    ++F   DT +     
Sbjct: 371 SIVVGATNFVFTIVAFMFIDRIGRRRILLCTSAVMIAGLALCAIAYHFLPADTTQNTNSG 430

Query: 472 VSWILLVALIVYTCATPS 525
             +++L ++I++  +  S
Sbjct: 431 WQYVVLASIIIFLASYAS 448


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -1

Query: 663  CSKTRKRFCTANHSDACINVCYAERVQLDISRETSPRL*HTAR 535
            C++  +     N   AC   C +E +Q    R   P L HT R
Sbjct: 881  CNEPIQNPLLLNCKHACCGDCLSEHIQYQKRRNIIPPLCHTCR 923


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 265 TTXKSIEPYQESIIIGCVQVAT---CILSVLLVDRVGRK 372
           T   S    ++ +I G V V +   CILS  L+DR+G++
Sbjct: 48  TDTYSYSSARQGLITGMVNVGSMTGCILSSPLMDRIGKR 86


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +3

Query: 291 SRIYYNRMRAGCYLYLVRTPRGPRRTQTASLAIDFGRRTNE 413
           S+++Y +M+   Y YL     G +R  +A  +++  +  +E
Sbjct: 119 SKVFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASE 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,215
Number of Sequences: 5004
Number of extensions: 62144
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)