Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0037
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1053 - 22575281-22575409,22575516-22575653,22575786-225758... 32 0.50
03_02_0179 - 6201393-6202365,6202470-6202610,6202728-6202767,620... 31 0.87
03_02_0023 + 5065962-5066079,5066179-5067614 31 0.87
12_02_0518 - 19937507-19938481,19938805-19939151,19939246-19939387 31 1.1
11_06_0528 - 24681630-24681751,24681911-24682025,24682134-246821... 31 1.1
09_02_0311 + 7164774-7166327 30 2.0
04_04_1600 + 34704527-34704758,34705393-34706777 30 2.0
09_02_0430 - 9313768-9314259,9314347-9315299,9316875-9317022 29 2.6
10_06_0088 - 10538037-10539463,10539696-10539789 29 3.5
04_04_0078 + 22573413-22573554,22573637-22573959,22574681-225753... 29 3.5
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230... 29 4.6
04_04_0345 - 24542869-24543540,24543725-24543805,24543845-245439... 29 4.6
04_04_0077 + 22568757-22568895,22568999-22569954,22570021-22570488 29 4.6
04_04_1601 + 34707975-34708209,34708598-34709970 28 6.1
12_02_0509 - 19829360-19830400,19831475-19831821,19831920-19832073 28 8.1
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301... 28 8.1
06_03_0418 + 20581420-20583207,20583243-20583254 28 8.1
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 28 8.1
>10_08_1053 -
22575281-22575409,22575516-22575653,22575786-22575884,
22576281-22576361,22577171-22577233,22577473-22577520,
22577622-22577990,22578082-22578183,22578290-22578414,
22578500-22578566,22578817-22578895,22578928-22579079,
22579182-22579223
Length = 497
Score = 31.9 bits (69), Expect = 0.50
Identities = 21/102 (20%), Positives = 49/102 (48%)
Frame = +1
Query: 298 SIIIGCVQVATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTIGTYFYFYDTNKQAVQNVS 477
S+++G +++ ++VL+VDR+GR+P ++G I + + +++
Sbjct: 342 SVLLGLLKLIMTGVAVLVVDRLGRRP------LLIGGVSG-IAVSLFLLSSYYTLLKDAP 394
Query: 478 WILLVALIVYTCATPSAY*PCRMLQSGRCFPTNVKLYAFCIA 603
++ ++AL++Y ++ P L FP ++ IA
Sbjct: 395 YVAVIALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSIA 436
>03_02_0179 -
6201393-6202365,6202470-6202610,6202728-6202767,
6204390-6204791,6205567-6205696
Length = 561
Score = 31.1 bits (67), Expect = 0.87
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 6/138 (4%)
Frame = +1
Query: 298 SIIIGCVQVATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTIGTYFYFYDTNKQAVQNVS 477
++I G V V + ++SV VDRVGR+ I T++
Sbjct: 367 AVITGAVNVLSTLVSVYSVDRVGRRMLLLEAGVQMFLSQVAIAVVLGIKVTDRSDNLGHG 426
Query: 478 WILLVALIVYTCATPSA--Y*PCRMLQSGRCFPTNVK----LYAFCIAHIYTGVAMVCSA 639
W ++V ++V T + A + P L FP + C+ ++T V
Sbjct: 427 WAIMVVVMVCTFVSSFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFL 486
Query: 640 ESLPGFRTSVLKFYTVFL 693
L + ++ F++ ++
Sbjct: 487 SMLCHLKYAIFAFFSAWV 504
>03_02_0023 + 5065962-5066079,5066179-5067614
Length = 517
Score = 31.1 bits (67), Expect = 0.87
Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 1/121 (0%)
Frame = +1
Query: 298 SIIIGCVQVATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTIGTYFYFYDTNKQA-VQNV 474
S+ +G + ++ LL+DRVGR+P T+ T D + + +
Sbjct: 327 SMAVGVCKTFFIPIATLLLDRVGRRPLLLASGGGMAIFLFTLATSLLMMDRRPEGEAKAL 386
Query: 475 SWILLVALIVYTCATPSAY*PCRMLQSGRCFPTNVKLYAFCIAHIYTGVAMVCSAESLPG 654
I + A++ + + S P + + +P ++ A A I TG+ + S +
Sbjct: 387 GAISIAAMLSFVASFASGLGPVAWVYTSEIYPVRLRAQA---AAIGTGLNRLMSGATTMS 443
Query: 655 F 657
F
Sbjct: 444 F 444
>12_02_0518 - 19937507-19938481,19938805-19939151,19939246-19939387
Length = 487
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/95 (15%), Positives = 38/95 (40%)
Frame = +1
Query: 298 SIIIGCVQVATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTIGTYFYFYDTNKQAVQNVS 477
+++ G + ++ ++++ L DRVGR+P +G+ F + + +
Sbjct: 322 NVVFGVAKASSILVAMALTDRVGRRPLLLASTGGMTASLLALGSVFAAFGGARDDAAVAA 381
Query: 478 WILLVALIVYTCATPSAY*PCRMLQSGRCFPTNVK 582
+ ++ + CA P + S P ++
Sbjct: 382 GAAVAVVVAFVCAFSVGIGPLAWVYSSEILPLRLR 416
>11_06_0528 -
24681630-24681751,24681911-24682025,24682134-24682193,
24682454-24682513,24682606-24682668,24682752-24682798,
24682884-24683049,24683136-24683228,24683306-24683370,
24683462-24683537,24683644-24683709,24684114-24684203,
24684359-24684421,24684548-24684670
Length = 402
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 298 SIIIGCVQVATCILSVLLVDRVGRKP 375
+I++GC+Q + LL+DR GR+P
Sbjct: 256 TILMGCIQAPITAVGALLMDRSGRRP 281
>09_02_0311 + 7164774-7166327
Length = 517
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +1
Query: 298 SIIIGCVQVATCILSVLLVDRVGRK 372
++I G V +A ++SVL VDRVGR+
Sbjct: 325 AVITGGVNMAATLVSVLAVDRVGRR 349
>04_04_1600 + 34704527-34704758,34705393-34706777
Length = 538
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 298 SIIIGCVQVATCILSVLLVDRVGRKP 375
++ +G + A L+++L+DRVGRKP
Sbjct: 350 TVAVGFFKTAFIALAIVLIDRVGRKP 375
>09_02_0430 - 9313768-9314259,9314347-9315299,9316875-9317022
Length = 530
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%)
Frame = +1
Query: 298 SIIIGCVQVATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTIGTYFYF-YDTNKQAVQNV 474
SII G + V ++S+++VDR+GR+ + + ++ + V
Sbjct: 329 SIITGSMLVVGALVSMVVVDRLGRRFLFIEAGIQMISSMVVVAVILALKFGHGEELSKGV 388
Query: 475 SWILLVALIVYTCATPSAY*PCRMLQSGRCFPTNVK----LYAFCIAHIYTGVAMVCSAE 642
+L+VA+ ++ A ++ P L FP ++ C+ +T C
Sbjct: 389 GTVLVVAICLFVVAYGWSWGPLGWLVPSELFPLEMRSAGQSVVVCVNLFWTAAVAQCFLA 448
Query: 643 SLPGFRTSVLKFYTVFL 693
++ R V + +
Sbjct: 449 AMCHLRWGVFILFAALI 465
>10_06_0088 - 10538037-10539463,10539696-10539789
Length = 506
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 298 SIIIGCVQVATCILSVLLVDRVGRKP 375
+I +G + A + ++LLVDR+GR+P
Sbjct: 311 TIGVGVTKTAFILTAILLVDRIGRRP 336
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 89 RGSWSDLFTEATN--KKAMWITLGVFTVQQFCGSAAVVAYSQFIF 217
+G W +LF T ++ + LG+ Q G AVV YS IF
Sbjct: 252 KGVWRELFLHPTPPVRRIVIAALGIHFFQHLTGIEAVVLYSPRIF 296
>04_04_0078 +
22573413-22573554,22573637-22573959,22574681-22575313,
22575383-22575838
Length = 517
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 298 SIIIGCVQVATCILSVLLVDRVGRK 372
++I+G V + +LS L++DR GRK
Sbjct: 328 NVILGAVNLVCLMLSTLVIDRYGRK 352
>11_06_0495 -
24319531-24320831,24320923-24321109,24322919-24323062,
24324467-24324469
Length = 544
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 298 SIIIGCVQVATCILSVLLVDRVGRKP 375
++ +G V+ + +++ LL DRVGR+P
Sbjct: 382 TVAVGVVKTCSILVATLLSDRVGRRP 407
>04_04_0345 -
24542869-24543540,24543725-24543805,24543845-24543910,
24543991-24544098,24545101-24545436,24545516-24545586,
24546105-24546252
Length = 493
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 68 VQEDMKNRGSWSDLFTEATNKKAMWITLGVFTVQQFCGSAAVVAYSQFI 214
++E+ GS+ D+F + A + G+ QQF G V+ YS I
Sbjct: 240 LEEESDGTGSYLDIFKSKELRLAFFAGAGLQAFQQFTGINTVMYYSPTI 288
>04_04_0077 + 22568757-22568895,22568999-22569954,22570021-22570488
Length = 520
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 298 SIIIGCVQVATCILSVLLVDRVGRK 372
++I+ V+ A+ ILS L++DR GRK
Sbjct: 327 AVILAGVKFASLILSTLVIDRYGRK 351
>04_04_1601 + 34707975-34708209,34708598-34709970
Length = 535
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 307 IGCVQVATCILSVLLVDRVGRKP 375
+G + +++++LVDRVGRKP
Sbjct: 352 VGLSKTVFIVIAIVLVDRVGRKP 374
>12_02_0509 - 19829360-19830400,19831475-19831821,19831920-19832073
Length = 513
Score = 27.9 bits (59), Expect = 8.1
Identities = 8/26 (30%), Positives = 19/26 (73%)
Frame = +1
Query: 298 SIIIGCVQVATCILSVLLVDRVGRKP 375
++++G + A+ ++ + L DR+GR+P
Sbjct: 338 TVLLGATKTASIVVPLFLADRLGRRP 363
>07_03_0968 -
23027940-23028149,23028800-23029002,23029610-23030138,
23030342-23030579,23031121-23031168,23031199-23031494
Length = 507
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 274 KSIEPYQESIIIGCVQVATCILSVLLVDRVGRK 372
K Y++ ++ + +L+ LLVDR+GRK
Sbjct: 356 KDANLYRDVLVTSLAEFPGLVLAALLVDRIGRK 388
>06_03_0418 + 20581420-20583207,20583243-20583254
Length = 599
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 576 CQAVRVLHSTHLYRRRYGLQCRISSGFSNKRIKILHSV 689
C +HS+ +YR R GL C++++ S + ++ + V
Sbjct: 337 CSCPSEIHSSPIYRDRPGLGCKLATPISCRDVRGIEMV 374
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 274 KSIEPYQESIIIGCVQVATCILSVLLVDRVGRK 372
K + Y+++ I +V ILS +LVD GRK
Sbjct: 524 KDVNLYKDTFITSLAEVPGLILSAVLVDWFGRK 556
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,283,690
Number of Sequences: 37544
Number of extensions: 400322
Number of successful extensions: 1015
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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