Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0037
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)                 33   0.29 
SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)                31   0.89 
SB_46144| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_35660| Best HMM Match : dTDP_sugar_isom (HMM E-Value=0)             30   1.5  
SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)                    29   2.7  
SB_6240| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_23067| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)
          Length = 456

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 18/75 (24%), Positives = 32/75 (42%)
 Frame = +1

Query: 283 EPYQESIIIGCVQVATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTIGTYFYFYDTNKQA 462
           +P    I+IG VQ     +S+ L+DR GR+               T   YF+        
Sbjct: 375 DPTGVPILIGAVQFVASAISLALIDRGGRRFLLIVAGVGMSISCFTCAVYFFITVNFGMT 434

Query: 463 VQNVSWILLVALIVY 507
             +++W+ + ++ VY
Sbjct: 435 EVDIAWLSVTSVAVY 449


>SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)
          Length = 660

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 252 PFGSMVGPVVQLNINCEYATTAALPQNCCTVKTPKVIHIAFLLVASVNK 106
           PF  +  PVV  N+  E+     +PQ  C  +T K  H+ F     V K
Sbjct: 9   PFPCLFPPVVPKNVLAEWLDVQKVPQYHC-AETEKYAHVTFFFNGGVEK 56


>SB_46144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 231 PVVQLNINCEYATTAALPQNCCTVKTPKVI 142
           P   + +  +YAT  +LPQ+ C VK PK I
Sbjct: 16  PGSNIYVKRQYATRLSLPQDVCAVKMPKNI 45


>SB_35660| Best HMM Match : dTDP_sugar_isom (HMM E-Value=0)
          Length = 229

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = +2

Query: 35  IRTELKSIELNVQEDMKNRGSWSDLFTEATNKKAMWITLGVFTVQQFCGSAAVVAYSQFI 214
           I  E+  + ++++ED    G W   +  A NK+ +W+  G        G       ++F+
Sbjct: 144 ISGEVFDVAVDIREDSPTFGKWVGEYLSAENKRQLWVPEGFAH-----GFYVTSEDAEFV 198

Query: 215 FNCT 226
           + CT
Sbjct: 199 YKCT 202


>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 512

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 17/119 (14%)
 Frame = +1

Query: 298 SIIIGCVQVATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTIGTYFYFY--DTNKQAVQ- 468
           S+IIG VQ     ++ L+VD+ GRK                +G YF  Y   T +Q    
Sbjct: 319 SVIIGAVQFVGTGIACLVVDKAGRKLLLWTTALGMTVSLIALGFYFELYIPTTQEQPTPT 378

Query: 469 --------------NVSWILLVALIVYTCATPSAY*PCRMLQSGRCFPTNVKLYAFCIA 603
                          +SW+ + +++V+      A+ P   L     FP   +  A  I+
Sbjct: 379 PALLESIHHSIPAGKISWLAITSIVVFNLVFALAWGPVPWLVMSEIFPLQARGIASSIS 437


>SB_6240| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +1

Query: 211 YIQLYHRTYHTAKWNLEETTXKSIEPYQESIIIGCVQVATCILSVLLVDRVGRKP 375
           YI +Y RT  T K ++E T+  S  P Q + I    ++AT I  ++    V R P
Sbjct: 177 YISIY-RTLRTHKSSIERTSAISSPPTQGASISVTTKIATTIGLIIATFLVCRTP 230


>SB_23067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +2

Query: 74  EDMKNRGSWSDLFTEATNKKAMWITLGVFTVQQFCGSAAVVAYSQFIFNCTTGPT 238
           ED + RGSW D   +  +  A W+ +  F +        VV Y+  +  C  G T
Sbjct: 152 EDSQPRGSWWDGIRDVVSLWAQWLLMFAFLI-----IYVVVTYATELHGCPRGYT 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,051,471
Number of Sequences: 59808
Number of extensions: 513056
Number of successful extensions: 1581
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1581
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)