Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0037
(693 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83113-3|CAB05545.1| 479|Caenorhabditis elegans Hypothetical pr... 30 1.4
U41023-1|AAA82340.1| 569|Caenorhabditis elegans Hypothetical pr... 29 2.4
AC006679-13|AAL38965.1| 644|Caenorhabditis elegans Coelomocyte ... 29 2.4
Z78201-4|CAB01590.2| 911|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z78019-10|CAE46691.1| 911|Caenorhabditis elegans Hypothetical p... 29 3.2
Z81544-6|CAI46607.1| 376|Caenorhabditis elegans Hypothetical pr... 29 4.2
U53151-1|AAB37069.1| 226|Caenorhabditis elegans Clathrin light ... 29 4.2
U39645-7|AAA80364.1| 190|Caenorhabditis elegans Hypothetical pr... 29 4.2
AL021497-8|CAA16409.1| 334|Caenorhabditis elegans Hypothetical ... 28 7.3
AF047651-6|AAC02725.3| 426|Caenorhabditis elegans Hypothetical ... 28 7.3
U34778-1|AAA97606.1| 418|Caenorhabditis elegans sma-2 protein. 27 9.6
U10327-1|AAC46583.1| 418|Caenorhabditis elegans MAD homolog 1 p... 27 9.6
M98552-8|AAA28204.3| 418|Caenorhabditis elegans Small protein 2... 27 9.6
AL117203-2|CAB55104.1| 321|Caenorhabditis elegans Hypothetical ... 27 9.6
AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical ... 27 9.6
>Z83113-3|CAB05545.1| 479|Caenorhabditis elegans Hypothetical
protein K08H10.6 protein.
Length = 479
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/63 (19%), Positives = 32/63 (50%)
Frame = +1
Query: 322 VATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTIGTYFYFYDTNKQAVQNVSWILLVALI 501
+ + +L+ + +D++GR+P +N + + + YD+ K + ++W L +
Sbjct: 327 IVSALLAAIAMDKIGRRPLLITSLLVLALINIFMMSLVFLYDSTKDSF--LAWPFLALFV 384
Query: 502 VYT 510
++T
Sbjct: 385 LFT 387
>U41023-1|AAA82340.1| 569|Caenorhabditis elegans Hypothetical
protein F53H8.3 protein.
Length = 569
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 92 GSWSDLFTEATNKKAMWITLGVFTVQQFCGSAAVVAYSQFIF-NCTTGPTI 241
G++ +LFT + + +++ V QQF G AV A+S +F N P I
Sbjct: 309 GTFRELFTRPDLRIPLAVSIIVMIAQQFTGCTAVFAFSTDMFLNAGLTPVI 359
>AC006679-13|AAL38965.1| 644|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform b protein.
Length = 644
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 517 TPSAY*PCRMLQSGRCFPTNVKLYAFCIAHIYT 615
T SAY P +L GRC P V C ++T
Sbjct: 597 TRSAYAPSNLLNLGRCVPVEVTRIFLCSGFLHT 629
>Z78201-4|CAB01590.2| 911|Caenorhabditis elegans Hypothetical
protein ZK836.2 protein.
Length = 911
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 35 IRTELKSIELNVQEDMKNRGSWSDLFTEATNKKAMWITLGVFT-VQQFCGSAAVVAYSQF 211
+ ELK ++ V D+ +RG W F +A W T GV T + +F G+ +V F
Sbjct: 478 LNNELKKVDSTVPIDISHRGRWEG-FKQAPKAIESWDT-GVATDLLRFIGAGSVKVPEDF 535
>Z78019-10|CAE46691.1| 911|Caenorhabditis elegans Hypothetical
protein ZK836.2 protein.
Length = 911
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 35 IRTELKSIELNVQEDMKNRGSWSDLFTEATNKKAMWITLGVFT-VQQFCGSAAVVAYSQF 211
+ ELK ++ V D+ +RG W F +A W T GV T + +F G+ +V F
Sbjct: 478 LNNELKKVDSTVPIDISHRGRWEG-FKQAPKAIESWDT-GVATDLLRFIGAGSVKVPEDF 535
>Z81544-6|CAI46607.1| 376|Caenorhabditis elegans Hypothetical
protein F49C5.9 protein.
Length = 376
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -1
Query: 147 VIHIAFLLVASVNKSLHDPRFFMSSWTFNSIL 52
+I+ AF L A+ K+LHD F+ +WTF I+
Sbjct: 276 LIYFAFPL-AAFTKALHDVEPFLGNWTFLIIM 306
>U53151-1|AAB37069.1| 226|Caenorhabditis elegans Clathrin light
chain protein 1 protein.
Length = 226
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 50 KSIELNVQEDMKNRGSWSDLFTEATNKKAMWITLGVFTVQQ 172
K+++L+ E++KN S +LF + + A W T+ QQ
Sbjct: 163 KTLQLSHDENLKNEKSNQELFAKQQDGDAQWETVNKLVDQQ 203
>U39645-7|AAA80364.1| 190|Caenorhabditis elegans Hypothetical
protein C14F11.6 protein.
Length = 190
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +2
Query: 44 ELKSIELNVQEDMKNRGSWSDLFTEATNKKAMWITLG 154
E+ + +++++D G W + NK A WI G
Sbjct: 89 EIFDVAVDIRKDSPTYGKWHGVVLNGDNKHAFWIPAG 125
>AL021497-8|CAA16409.1| 334|Caenorhabditis elegans Hypothetical
protein Y51A2D.12 protein.
Length = 334
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 56 IELNVQEDMKNRGSWSDLFTEAT-NKKAMWITLGVFTVQQFCGSAAVVAYSQFIFNC 223
+ L + ++ +G++S ++ N W L +F F AY+Q+IFNC
Sbjct: 61 VTLRIPQNTGVQGTFSSFYSNLNLNNTENWFPLNIFHTFHF-----EFAYTQYIFNC 112
>AF047651-6|AAC02725.3| 426|Caenorhabditis elegans Hypothetical
protein C05D2.8 protein.
Length = 426
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 56 IELNVQEDMKNRGSWSDLFTEATNKKAMWITLG 154
+E+ + DMK S +F +A+N+ +ITLG
Sbjct: 85 VEMEKKHDMKQDWSADAVFFDASNRDGWYITLG 117
>U34778-1|AAA97606.1| 418|Caenorhabditis elegans sma-2 protein.
Length = 418
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 127 QKSDVDYFRGFHGTTV--LWQRCSRCVFTIYI 216
Q S+ +Y GFH TTV + +CS +F + I
Sbjct: 309 QSSNCNYINGFHSTTVVKIANKCSLKIFDMEI 340
>U10327-1|AAC46583.1| 418|Caenorhabditis elegans MAD homolog 1
protein.
Length = 418
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 127 QKSDVDYFRGFHGTTV--LWQRCSRCVFTIYI 216
Q S+ +Y GFH TTV + +CS +F + I
Sbjct: 309 QSSNCNYINGFHSTTVVKIANKCSLKIFDMEI 340
>M98552-8|AAA28204.3| 418|Caenorhabditis elegans Small protein 2
protein.
Length = 418
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 127 QKSDVDYFRGFHGTTV--LWQRCSRCVFTIYI 216
Q S+ +Y GFH TTV + +CS +F + I
Sbjct: 309 QSSNCNYINGFHSTTVVKIANKCSLKIFDMEI 340
>AL117203-2|CAB55104.1| 321|Caenorhabditis elegans Hypothetical
protein Y48C3A.3 protein.
Length = 321
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 145 YFRGFHGTTVLWQRCSRCVFTIYIQLYHRTYHTAKWNLEETTXKSIEPYQESI 303
YF GF T V C+F+ Q+Y+ Y + +L + K++ Y E I
Sbjct: 239 YFHGFKPTKV-----DACIFSHLCQIYYAPYTSEHRDLIDGECKNLAEYVERI 286
>AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical
protein C35A11.4 protein.
Length = 515
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 256 LEETTXKSIEPYQESIIIGCVQVATCILSVLLVDRVGRKP 375
L++T K +E + I V + + I++ ++VDR GR+P
Sbjct: 295 LKDTGLKVLEASLANDAISVVSMISSIVAAVIVDRNGRRP 334
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,692,517
Number of Sequences: 27780
Number of extensions: 356209
Number of successful extensions: 919
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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