Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0034
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F1D63A Cluster: PREDICTED: hypothetical protein;...    37   0.41 
UniRef50_Q2AZX2 Cluster: Regulatory protein, LysR:LysR, substrat...    36   0.72 
UniRef50_UPI0000E22811 Cluster: PREDICTED: hypothetical protein;...    36   0.96 
UniRef50_Q4SNT5 Cluster: Chromosome 15 SCAF14542, whole genome s...    35   1.7  
UniRef50_A4KQN3 Cluster: Pseudouridine synthase; n=11; Francisel...    34   3.9  
UniRef50_A7FGE2 Cluster: Cytoplasmic chaperone, TorD family; n=1...    33   6.7  
UniRef50_A7S029 Cluster: Predicted protein; n=1; Nematostella ve...    33   8.9  

>UniRef50_UPI0000F1D63A Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 817

 Score = 37.1 bits (82), Expect = 0.41
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +1

Query: 379 HQDLGC-TDQEANQATLHQYLDCQDLEVSQVIPHRATNPATSHIVPYSNVWVFTWLQQLR 555
           HQD  C   +   +  L Q    Q  ++++++ H A +P T+H     +VW+     Q+ 
Sbjct: 107 HQDQRCPASRVTGEPALTQMCKSQYFDINEIVAHEAWSPCTAHYTQDQSVWL-----QVG 161

Query: 556 FARYIYPSSLILYVS 600
           F R    +S+I+Y++
Sbjct: 162 FERPGVAASVIIYLA 176


>UniRef50_Q2AZX2 Cluster: Regulatory protein, LysR:LysR,
           substrate-binding; n=1; Bacillus weihenstephanensis
           KBAB4|Rep: Regulatory protein, LysR:LysR,
           substrate-binding - Bacillus weihenstephanensis KBAB4
          Length = 290

 Score = 36.3 bits (80), Expect = 0.72
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = -1

Query: 151 PILMKDSSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVYFRI 17
           PIL K+S   F I+  PIL+ ++S Y+   +   + +NNL + RI
Sbjct: 174 PILHKESIEVFDIVNYPILIGENSCYYYQSVNAFLSENNLSFKRI 218


>UniRef50_UPI0000E22811 Cluster: PREDICTED: hypothetical protein;
           n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
           protein - Pan troglodytes
          Length = 711

 Score = 35.9 bits (79), Expect = 0.96
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 18/81 (22%)
 Frame = +3

Query: 51  VRVIKLWK*TELSFIN------IGIVRIWK*AELSFIN------IGIIRVWK*AELSLIR 194
           V  I+ W  T++SFI       +  +R W   ++SFI       +  IR W   ++S IR
Sbjct: 24  VSFIRTWTDTQVSFIRTWADTQVSFIRTWADTQVSFIRTWADTRVSFIRTWADTQVSFIR 83

Query: 195 IWA------IRICKQTKLSFI 239
            WA      IR    T++SFI
Sbjct: 84  TWADTQVSFIRTWPDTQVSFI 104



 Score = 35.9 bits (79), Expect = 0.96
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 18/81 (22%)
 Frame = +3

Query: 51  VRVIKLWK*TELSFIN------IGIVRIWK*AELSFIN------IGIIRVWK*AELSLIR 194
           V  I+ W  T++SFI       +  +R W   ++SFI       +  IR W   ++S IR
Sbjct: 46  VSFIRTWADTQVSFIRTWADTRVSFIRTWADTQVSFIRTWADTQVSFIRTWPDTQVSFIR 105

Query: 195 IWA------IRICKQTKLSFI 239
            WA      IR    T++SFI
Sbjct: 106 TWADTQVSFIRTWPDTQVSFI 126



 Score = 34.3 bits (75), Expect = 2.9
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
 Frame = +3

Query: 51  VRVIKLWK*TELSFINIGIVRIWK*AELSFIN------IGIIRVWK*AELSLIRIWA--- 203
           V  I+ W  T++SFI     R W   ++SFI       +  IR W   ++S IR WA   
Sbjct: 13  VSFIRTWADTQVSFI-----RTWTDTQVSFIRTWADTQVSFIRTWADTQVSFIRTWADTR 67

Query: 204 ---IRICKQTKLSFI 239
              IR    T++SFI
Sbjct: 68  VSFIRTWADTQVSFI 82



 Score = 33.9 bits (74), Expect = 3.9
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
 Frame = +3

Query: 51  VRVIKLWK*TELSFIN------IGIVRIWK*AELSFIN------IGIIRVWK*AELSLIR 194
           V  I+ W  T++SFI       +  +R W   ++SFI       +  IR W   ++S IR
Sbjct: 90  VSFIRTWPDTQVSFIRTWADTQVSFIRTWPDTQVSFIRTWPDTQVSFIRTWPDTQMSFIR 149

Query: 195 IWAIR 209
            W  R
Sbjct: 150 TWMAR 154


>UniRef50_Q4SNT5 Cluster: Chromosome 15 SCAF14542, whole genome
           shotgun sequence; n=3; Euteleostomi|Rep: Chromosome 15
           SCAF14542, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 724

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
 Frame = +1

Query: 337 GSGLQARVVNLVILHQDLGCTDQEANQATLHQYLDC----QDLEVSQVIPHRATNPATSH 504
           GS LQ +V NLV+  +D+  T +E  Q       DC    +D+  +  I H   +   + 
Sbjct: 247 GSDLQLQVQNLVLALRDI--TRKEREQLLERVKEDCSRVREDMSQTLSIQHYLAS-LLAE 303

Query: 505 IVPYSNVWVFTWLQQLRFARYIYPSSLILYVS 600
             P+  +WV TW + L      +PS L L  S
Sbjct: 304 TDPFLLIWVGTWCKTLSLLPAFHPSLLTLLSS 335


>UniRef50_A4KQN3 Cluster: Pseudouridine synthase; n=11; Francisella
           tularensis|Rep: Pseudouridine synthase - Francisella
           tularensis subsp. holarctica 257
          Length = 332

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +2

Query: 17  DPEVNQVILHHGSGHQALEVNRAILHQYRDCQDLEVSRAILHQY-RDYQGLEVS 175
           D  VN ++ H G+G+    V+ A+LH+Y+D QD      I+H+  +D  GL V+
Sbjct: 101 DKPVNMIV-HPGAGNPTGTVSNALLHRYKD-QDKLPRAGIVHRLDKDTSGLMVA 152


>UniRef50_A7FGE2 Cluster: Cytoplasmic chaperone, TorD family; n=11;
           Yersinia|Rep: Cytoplasmic chaperone, TorD family -
           Yersinia pseudotuberculosis IP 31758
          Length = 221

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 496 TSHIVPYSNVWVFTWLQQLRFARYIYPSSLILYVSTVCFM-FMSIVILISPYPR 654
           T+H++P    W + +L+Q+  A+  YP   +L     C++  + I +++SP PR
Sbjct: 168 TAHLLP----WAYRYLEQVNAAQVEYPVYPLLAKIAACYLKTLQIELVLSPLPR 217


>UniRef50_A7S029 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 1013

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
 Frame = +1

Query: 331 HHGSGLQARVVNLVILHQDLGCTDQEANQ--ATLH--QYLDCQDLEVSQVIPHRATNPAT 498
           HH SG  + +++ +I+H   G T QE  +   +LH  +++    + + +V+ +  TNP  
Sbjct: 157 HHKSGFSSALIDYLIVHICQGQTMQEIAEGIGSLHFREFVRRSAIVIGEVLDNFHTNPLY 216

Query: 499 SHIVPYSNVWVFTWLQQLRFARYIYPSSLILYVSTVC 609
           S       + VF W  + + A Y   +  +   + VC
Sbjct: 217 SFPSNDKLMHVFLWYFRQKKASYRAHTETLSGTTIVC 253


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 574,352,341
Number of Sequences: 1657284
Number of extensions: 10478783
Number of successful extensions: 25940
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25871
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)