Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0034
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    23   3.2  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   4.2  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   5.5  

>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 513 ILQRMGLHMATTTTVRTLHISLIAHIIRLHSMFYVHEYRNSDKPL 647
           + +   LH ATT       ISL   I+RL S+ +   + N +  L
Sbjct: 304 VFESFYLHKATTLETVYYFISLGLLILRLVSVCFYGSWINEESKL 348


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +1

Query: 448 DLEVSQVIPHRATNPATSHIVPYSNVWVFTWLQQLRFARYIYPSS 582
           DL   +V  +  T+  TS +VP      ++W +   FA    P +
Sbjct: 31  DLSTFRVPTYGTTSHPTSKLVPPDERITYSWTEINAFANVSPPKT 75


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 448 DLEVSQVIPHRATNPATSHIVPYSNVWVFTWLQQLRFARYIYPS 579
           DL   +V  +  T+  TS +VP      ++W +   FA  + PS
Sbjct: 31  DLSTFRVPTYGTTSHPTSKLVPPDERITYSWTEINAFAN-VSPS 73


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,382
Number of Sequences: 336
Number of extensions: 2801
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)