Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0034
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 29 0.85
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 29 0.85
SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subun... 28 1.5
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.0
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces... 27 3.4
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 27 3.4
SPAC1399.04c |||uracil phosphoribosyltransferase |Schizosaccharo... 27 3.4
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 26 4.5
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe... 26 6.0
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 28.7 bits (61), Expect = 0.85
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 521 TYGSSHGYNNYGSHATY 571
TYGSS+ Y NYGS Y
Sbjct: 57 TYGSSNNYGNYGSSNNY 73
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 524 YGSSHGYNNYGSHATY 571
YGSS+ Y +YG+ TY
Sbjct: 67 YGSSNNYGSYGASNTY 82
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 28.7 bits (61), Expect = 0.85
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 262 EVSRAILRLDQDCQDLEVSQAIRHHGSGLQARVVNLVILHQDLGCTDQEANQATLHQY-- 435
E++ + ++ Q+C D + ++HH ARV V + G ++ + H Y
Sbjct: 145 EITDPLEKMTQECMDAPDCKEVKHHFEECTARVTKKV----EQGDKSEDCIEEFFHLYHC 200
Query: 436 -LDCQDLEVSQVI 471
DC D +V +V+
Sbjct: 201 ARDCADPKVFKVL 213
>SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subunit
2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 72
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 583 LILYVSTVCFMFMSIVILISPYPRFANWAXALY 681
+I+Y+ST F++ +I +LI P+ N + L+
Sbjct: 1 MIVYISTAAFLYYTIWVLIMPFVDNMNISQKLF 33
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 412 NQATLHQYLDCQDLEVSQVIPHRATNPATSHIVPYS 519
N L+++LD D ++ + HR SH+ PYS
Sbjct: 416 NAKKLNEWLDSLDFKLPIYLFHRKLESELSHLPPYS 451
>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -1
Query: 223 VCLQILIAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSL-MTRTM 47
V QI+ A ++ + + P+LM F L + + + SSV+FQ+L + +
Sbjct: 93 VSSQIVFAILVTILNKQALNIINAPLLMLSFQMAFTSLMVKMYWRFSSVHFQTLRLASAI 152
Query: 46 MKNNLVYFRILTIL 5
++ +IL I+
Sbjct: 153 QLKKFIFVKILGIV 166
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = -1
Query: 238 MKDSLVCLQILIAQILMRDSSAYFQTLII---PILMKDSSAYFQILTIPILMKDSSVYFQ 68
M D L I ++ + + + Q++I +++KDS LT +L + F+
Sbjct: 752 MVDLQSILLSCIKRLAIAEQPRFIQSIIYVFAKLIVKDSLGMMHFLTSSLLNEQGLTAFE 811
Query: 67 SLMTRTMMKNNLVYF 23
LM T+ +N VYF
Sbjct: 812 VLM--TVWCDNFVYF 824
>SPAC1399.04c |||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 220
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = -1
Query: 196 ILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVY--FQSLMTRTMMKNNLVYF 23
++ RD + + L+ L KD+ +L P+L +SV Q+L+ + + + N+V+
Sbjct: 110 LVQRDETTFEAKLMFCKLPKDAQDRLVLLLDPLLATGNSVILAIQTLINKGIPEENIVFV 169
Query: 22 RIL 14
++
Sbjct: 170 NLI 172
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 527 GSSHGYNNYGSHATYIPHRS 586
G H YNN HAT++ H +
Sbjct: 175 GKGHRYNNSPQHATWLRHNT 194
>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 182
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 571 YPSSLILYVSTVCFMFMSIVILISPYPRFANWAXALYNH 687
Y S LILY V ++ +I ++ P+F N A +Y H
Sbjct: 102 YWSQLILYYVPVYWLLKAIFLIWLALPKF-NGATIIYRH 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,098
Number of Sequences: 5004
Number of extensions: 44350
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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