Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0034
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0117 + 20302795-20304816                                         29   2.7  
08_01_0238 - 1988688-1988830,1988989-1989257,1989339-1989600,198...    29   2.7  

>11_06_0117 + 20302795-20304816
          Length = 673

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 430 QYLDCQDLEVSQVIPHRATNPATSHIVPYSNVWV----FTWLQQLRFARYIYPSSLIL 591
           QYLD   L  + ++P++  N +    +  S   +     +WL +L++ +Y+Y SS+ L
Sbjct: 151 QYLDLSGLGFTGMVPYQLGNLSKLEFLDLSGTGMQSADISWLTRLQWLKYLYLSSVNL 208


>08_01_0238 -
           1988688-1988830,1988989-1989257,1989339-1989600,
           1989693-1989805,1990560-1990594,1990771-1990878,
           1992178-1992483
          Length = 411

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 498 CSWVCSPMRYNLAYFQILTIQILMKGSLVCFLI 400
           C+WV S    N  Y   LT+  ++  S+VCF I
Sbjct: 101 CTWVLSSKEINFPYPVALTLLHMVFSSVVCFAI 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,170,922
Number of Sequences: 37544
Number of extensions: 281579
Number of successful extensions: 639
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)