Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0034
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036) 33 0.29
SB_39109| Best HMM Match : PT (HMM E-Value=5) 32 0.51
SB_18443| Best HMM Match : Phage_attach (HMM E-Value=5.3) 30 2.1
SB_45146| Best HMM Match : DUF504 (HMM E-Value=9.8) 29 2.7
SB_58963| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_37206| Best HMM Match : MFS_1 (HMM E-Value=3.4e-17) 28 6.3
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011) 28 8.4
SB_855| Best HMM Match : 7tm_2 (HMM E-Value=5.4e-12) 28 8.4
SB_59619| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036)
Length = 1014
Score = 32.7 bits (71), Expect = 0.29
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Frame = +1
Query: 331 HHGSGLQARVVNLVILHQDLGCTDQEANQ--ATLH--QYLDCQDLEVSQVIPHRATNPAT 498
HH SG + +++ +I+H G T QE + +LH +++ + + +V+ + TNP
Sbjct: 158 HHKSGFSSALIDYLIVHICQGQTMQEIAEGIGSLHFREFVRRSAIVIGEVLDNFHTNPLY 217
Query: 499 SHIVPYSNVWVFTWLQQLRFARYIYPSSLILYVSTVC 609
S + VF W + + A Y + + + VC
Sbjct: 218 SFPSNDKLMHVFLWYFRQKKASYRAHTETLSGTTIVC 254
>SB_39109| Best HMM Match : PT (HMM E-Value=5)
Length = 231
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/62 (20%), Positives = 30/62 (48%)
Frame = -1
Query: 205 IAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVY 26
+ Q+ S YF++ ++ + S YF++ + + S YF+S + + ++ Y
Sbjct: 38 VLQVASNSSRQYFKSPVLQVASTSSRQYFKLPVLQVASTSSREYFKSPVLQVASTSSREY 97
Query: 25 FR 20
F+
Sbjct: 98 FK 99
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/62 (20%), Positives = 29/62 (46%)
Frame = -1
Query: 205 IAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVY 26
+ Q+ S YF++ ++ + S YF+ + + S YF+S + + ++ Y
Sbjct: 102 VLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREY 161
Query: 25 FR 20
F+
Sbjct: 162 FK 163
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/62 (20%), Positives = 29/62 (46%)
Frame = -1
Query: 205 IAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVY 26
+ Q+ S YF++ ++ + S YF+ + + S YF+S + + ++ Y
Sbjct: 118 VLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREY 177
Query: 25 FR 20
F+
Sbjct: 178 FK 179
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/62 (20%), Positives = 29/62 (46%)
Frame = -1
Query: 205 IAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVY 26
+ Q+ S YF++ ++ + S YF+ + + S YF+S + + ++ Y
Sbjct: 134 VLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREY 193
Query: 25 FR 20
F+
Sbjct: 194 FK 195
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/62 (20%), Positives = 29/62 (46%)
Frame = -1
Query: 205 IAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVY 26
+ Q+ S YF++ ++ + S YF+ + + S YF+S + + ++ Y
Sbjct: 150 VLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREY 209
Query: 25 FR 20
F+
Sbjct: 210 FK 211
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/62 (20%), Positives = 29/62 (46%)
Frame = -1
Query: 205 IAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVY 26
+ Q+ S YF++ ++ + S YF+ + + S YF+S + + ++ Y
Sbjct: 166 VLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREY 225
Query: 25 FR 20
F+
Sbjct: 226 FK 227
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/62 (20%), Positives = 29/62 (46%)
Frame = -1
Query: 205 IAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVY 26
+ Q+ S YF++ ++ + S YF+ + + S YF+S + + ++ Y
Sbjct: 86 VLQVASTSSREYFKSPVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREY 145
Query: 25 FR 20
F+
Sbjct: 146 FK 147
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = -2
Query: 459 YFQILTIQILMKGSLVCFLIRTAQILMKDN*VYYPSLKTRTMMTNSLAYFQILTILIQTK 280
YF+ +Q+ S F R Q+ + Y+ S + T+S YF+ + + +
Sbjct: 113 YFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVAST 172
Query: 279 DSSAYFQIR 253
S YF+ R
Sbjct: 173 SSREYFKSR 181
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = -2
Query: 459 YFQILTIQILMKGSLVCFLIRTAQILMKDN*VYYPSLKTRTMMTNSLAYFQILTILIQTK 280
YF+ +Q+ S F R Q+ + Y+ S + T+S YF+ + + +
Sbjct: 129 YFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVAST 188
Query: 279 DSSAYFQIR 253
S YF+ R
Sbjct: 189 SSREYFKSR 197
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = -2
Query: 459 YFQILTIQILMKGSLVCFLIRTAQILMKDN*VYYPSLKTRTMMTNSLAYFQILTILIQTK 280
YF+ +Q+ S F R Q+ + Y+ S + T+S YF+ + + +
Sbjct: 145 YFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVAST 204
Query: 279 DSSAYFQIR 253
S YF+ R
Sbjct: 205 SSREYFKSR 213
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = -2
Query: 459 YFQILTIQILMKGSLVCFLIRTAQILMKDN*VYYPSLKTRTMMTNSLAYFQILTILIQTK 280
YF+ +Q+ S F R Q+ + Y+ S + T+S YF+ + + +
Sbjct: 161 YFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVAST 220
Query: 279 DSSAYFQIR 253
S YF+ R
Sbjct: 221 SSREYFKSR 229
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/62 (20%), Positives = 29/62 (46%)
Frame = -1
Query: 205 IAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVY 26
+ Q+ S YF++ ++ + S YF+ + + S YF+S + + ++ Y
Sbjct: 70 VLQVASTSSREYFKSPVLQVASTSSREYFKSPVLQVASTSSREYFKSRVLQVASTSSREY 129
Query: 25 FR 20
F+
Sbjct: 130 FK 131
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = -2
Query: 459 YFQILTIQILMKGSLVCFLIRTAQILMKDN*VYYPSLKTRTMMTNSLAYFQILTILIQTK 280
YF+ +Q+ S F R Q+ + Y+ S + T+S YF+ + + +
Sbjct: 97 YFKSPVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVAST 156
Query: 279 DSSAYFQIR 253
S YF+ R
Sbjct: 157 SSREYFKSR 165
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = -1
Query: 205 IAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVY 26
+ Q+ S YF+ ++ + S YF+ + + S YF+S + + ++ Y
Sbjct: 54 VLQVASTSSRQYFKLPVLQVASTSSREYFKSPVLQVASTSSREYFKSPVLQVASTSSREY 113
Query: 25 FR 20
F+
Sbjct: 114 FK 115
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = -2
Query: 459 YFQILTIQILMKGSLVCFLIRTAQILMKDN*VYYPSLKTRTMMTNSLAYFQILTILIQTK 280
YF++ +Q+ S F Q+ + Y+ S + T+S YF+ + + +
Sbjct: 65 YFKLPVLQVASTSSREYFKSPVLQVASTSSREYFKSPVLQVASTSSREYFKSRVLQVAST 124
Query: 279 DSSAYFQIR 253
S YF+ R
Sbjct: 125 SSREYFKSR 133
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = -2
Query: 459 YFQILTIQILMKGSLVCFLIRTAQILMKDN*VYYPSLKTRTMMTNSLAYFQILTILIQTK 280
YF+ +Q+ S F + Q+ + Y+ S + T+S YF+ + + +
Sbjct: 49 YFKSPVLQVASTSSRQYFKLPVLQVASTSSREYFKSPVLQVASTSSREYFKSPVLQVAST 108
Query: 279 DSSAYFQIR 253
S YF+ R
Sbjct: 109 SSREYFKSR 117
>SB_18443| Best HMM Match : Phage_attach (HMM E-Value=5.3)
Length = 194
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 59 HQALEVNRAI-LHQYRDCQDLEVSRAILHQ-YRDYQGLEVSRA 181
+++ EV RA L YR + EV+R + YR Y+G EV+RA
Sbjct: 11 YESTEVTRAQKLRGYRSYEGTEVTRVQKSRGYRSYEGTEVTRA 53
>SB_45146| Best HMM Match : DUF504 (HMM E-Value=9.8)
Length = 273
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 59 HQALEVNRAI-LHQYRDCQDLEVSRAI-LHQYRDYQGLEVSR 178
++ EV R + L YR + EV+R L YR+Y+G E++R
Sbjct: 78 YEGTEVMRVLKLRGYRSYESTEVTRVQKLRGYRNYEGTEITR 119
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +2
Query: 23 EVNQVILHHG-SGHQALEVNRAI-LHQYRDCQDLEVSRAI-LHQYRDYQGLEVSRAI 184
EV +V+ G +++ EV R L YR+ + E++R L YR Y+G EV R +
Sbjct: 82 EVMRVLKLRGYRSYESTEVTRVQKLRGYRNYEGTEITRVQKLRGYRSYEGTEVPRVL 138
>SB_58963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 494 LHLT*SHTPTYGSSHGYNNYGSHATYIP--HRSYYTSPQYV 610
+H T +P Y + H + Y SH TYI H + TSP Y+
Sbjct: 25 IHHTTPTSPLYITPHLHCPYTSHHTYIAPIHHTTPTSPLYI 65
>SB_37206| Best HMM Match : MFS_1 (HMM E-Value=3.4e-17)
Length = 1088
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 565 YIYPSSLILYVSTVCFMFMSIVILISPYP 651
++ P ++L T CF+ MSI+ PYP
Sbjct: 918 FVKPDKMLLANLTGCFVSMSIMFYCHPYP 946
>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
Length = 734
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +2
Query: 32 QVILHHGSGHQALEVNRAILHQYRDCQDLEVSRAILHQYRDYQGLEVSRAIPHQDL 199
+ I+H S L R ++H + L +R ++H + L +R I H L
Sbjct: 242 RTIIHTHSPSHTLSFTRTLIHTHSHSHALLFTRTLIHTHSHPHSLLFTRTIIHTTL 297
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 32 QVILH-HGSGHQALEVNRAILHQYRDCQDLEVSRAILHQYRDYQGLEVSRAIPH 190
+ I+H H H AL ++H + L + ++H + L +R I H
Sbjct: 376 RTIIHTHSHSHHALSFTCTLIHTHSHSLALSFTSTLIHTHSHSHALSFTRTIIH 429
>SB_855| Best HMM Match : 7tm_2 (HMM E-Value=5.4e-12)
Length = 701
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 502 HIVPYSNVWVFTWLQQLRF-ARYIYPSSLILYVSTVCFMFMSIVILISPY 648
HI+ SN F W+QQ F ++ P L++ +TV F+F+ I P+
Sbjct: 447 HIIE-SNNQTFCWMQQDAFYGAFLAPVLLLVVGNTVVFVFVMREIYRMPH 495
>SB_59619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -2
Query: 426 KGSLVCFLIRTAQILMKDN*VYYPSLKTRTMMTNSLAYFQILTILIQTKDSSAYFQIRQS 247
K LV L+ + MK+N + ++ ++ T SL YF TI I+ Q +Q+
Sbjct: 302 KKQLVVHLVNAVDLPMKNNNLLDSFVREFSIFTVSLIYFPDPTISIELTHKGETIQKQQT 361
Query: 246 R 244
R
Sbjct: 362 R 362
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,609,349
Number of Sequences: 59808
Number of extensions: 341850
Number of successful extensions: 839
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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