Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0034
         (700 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    25   3.0  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            24   5.3  
AY578807-1|AAT07312.1|  438|Anopheles gambiae punt protein.            24   5.3  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   5.3  

>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 152 DYQGLEVSRAIPHQDLGYQDL*ANQAILHQYRDCRIWK 265
           DY  L++ +  PH+D   Q L A Q I+ Q  + R+ K
Sbjct: 85  DYSFLQIEKNEPHRDFDSQQLEAVQ-IMPQKMNLRLGK 121


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 17  DPEVNQVILHHGSGHQALEVNRAILHQY 100
           DP  N ++LHH   HQ  +  +  LH +
Sbjct: 136 DPTRNGIVLHH-QAHQQQQQQQQQLHHH 162


>AY578807-1|AAT07312.1|  438|Anopheles gambiae punt protein.
          Length = 438

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 557 NRSCCSHVKTHTLEYGTM*DVAGFVAR*GITWLTSRS*QSR 435
           N S C  +K HT+ +  +  +A  +AR G+T L      SR
Sbjct: 200 NGSLCDFLKAHTVSWTELCKIATTMAR-GLTHLHEEIQSSR 239


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 20  PEVNQVILHHGSGHQALEVNRAILHQYRD 106
           PE  Q +LH G+G +A+     I+    D
Sbjct: 58  PEQRQALLHEGTGPRAMSAYVEIIFDNSD 86


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 593,802
Number of Sequences: 2352
Number of extensions: 12065
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)