Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0034
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023838-3|CAA19503.1|  108|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z50797-7|CAD27609.1|  195|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AB086410-1|BAC44993.1|  195|Caenorhabditis elegans ABF-6 protein.      28   5.6  

>AL023838-3|CAA19503.1|  108|Caenorhabditis elegans Hypothetical
           protein Y43C5A.3 protein.
          Length = 108

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 512 HTPTYGSSHGYNNYGSHATYIP-HRSYYTSPQY 607
           ++P YG   GY NYG +  Y P + SY   P Y
Sbjct: 26  YSPYYGG--GYGNYGGYGNYYPSYSSYSYYPSY 56


>Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical
           protein E02H4.2 protein.
          Length = 560

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 530 SSHGYNNYGSHATYIPHRSYYTSPQYVLCS 619
           +S+ Y N  +H   +PH+ YY S QY L S
Sbjct: 117 TSYQYANQ-NHPAQLPHQKYYNSEQYALQS 145


>AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical
           protein C45H4.13 protein.
          Length = 349

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 509 SHTPTYGSSH--GYNNYGSHATYIPHRSYYTSPQYVLCS 619
           S++P+Y S++  GYNNYG +     + + Y S  Y  C+
Sbjct: 290 SYSPSYYSNYYGGYNNYGYNNYGYGYNNNYYSGNYYCCN 328


>Z50797-7|CAD27609.1|  195|Caenorhabditis elegans Hypothetical
           protein T22H6.7 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +2

Query: 515 TPTYGSSHGYN---NYGSHATYIPHRSYYTSPQY 607
           TP YG+++GYN   N G++  Y  +  Y T+  Y
Sbjct: 101 TPNYGNNNGYNNGYNNGNNMRYNDNNGYNTNNGY 134


>AB086410-1|BAC44993.1|  195|Caenorhabditis elegans ABF-6 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +2

Query: 515 TPTYGSSHGYN---NYGSHATYIPHRSYYTSPQY 607
           TP YG+++GYN   N G++  Y  +  Y T+  Y
Sbjct: 101 TPNYGNNNGYNNGYNNGNNMRYNDNNGYNTNNGY 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,796,865
Number of Sequences: 27780
Number of extensions: 242324
Number of successful extensions: 721
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)