Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0034
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53290.1 68414.m06040 galactosyltransferase family protein co...    30   1.3  
At3g14960.1 68416.m01892 galactosyltransferase family protein co...    29   3.9  
At2g29760.1 68415.m03616 pentatricopeptide (PPR) repeat-containi...    28   6.8  
At5g57040.1 68418.m07120 lactoylglutathione lyase family protein...    27   9.0  

>At1g53290.1 68414.m06040 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
           ;contains similarity to Avr9 elicitor response protein
           GI:4138265 from [Nicotiana tabacum]
          Length = 345

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 570 YVACEP*LL*PCEDPYVGVWDYVRCSWVCSP 478
           ++ CEP     C    V VWD  +CS +C+P
Sbjct: 295 HILCEP----ECSPSSVAVWDIPKCSGLCNP 321


>At3g14960.1 68416.m01892 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 343

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 573 IYVACEP*LL*PCEDPYVGVWDYVRCSWVCSP 478
           ++  CEP     C    + VWD  +CS +C+P
Sbjct: 292 LHTLCEP----ECSPYSIAVWDIPKCSGLCNP 319


>At2g29760.1 68415.m03616 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 738

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 26  VNQVILHHGSGHQALEVNRAILHQYRDCQDLEVSRAILH 142
           ++  I  HG       V  A++H Y  C DLE SR + +
Sbjct: 387 IHSYIKKHGI-RMNFHVTSALIHMYSKCGDLEKSREVFN 424


>At5g57040.1 68418.m07120 lactoylglutathione lyase family protein /
           glyoxalase I family protein contains Pfam PF00903:
           glyoxalase family protein
          Length = 197

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 107 CQDLEVSRAILHQYRDYQGLEVSRAIPHQDLGYQ 208
           C++LE S   L  Y++  GLE++ A PH  L Y+
Sbjct: 86  CENLERS---LEFYQNILGLEINEARPHDKLPYR 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,244,560
Number of Sequences: 28952
Number of extensions: 226289
Number of successful extensions: 536
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)