Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0033
(728 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q83S36 Cluster: UPF0194 membrane protein ybhG precursor... 62 1e-08
UniRef50_Q1R8J2 Cluster: Putative uncharacterized protein; n=1; ... 52 1e-05
UniRef50_P77130 Cluster: Putative uncharacterized protein; n=1; ... 52 2e-05
UniRef50_P71310 Cluster: Putative uncharacterized protein; n=3; ... 52 2e-05
UniRef50_A2UL04 Cluster: Putative uncharacterized protein; n=1; ... 51 3e-05
UniRef50_A7MJ26 Cluster: Putative uncharacterized protein; n=1; ... 47 5e-04
UniRef50_Q79BJ0 Cluster: Putative uncharacterized protein; n=2; ... 46 7e-04
UniRef50_UPI00015C4E7E Cluster: hypothetical protein EcHS_A0562;... 45 0.002
UniRef50_Q8FAY0 Cluster: Putative uncharacterized protein; n=1; ... 43 0.007
UniRef50_UPI00015C4E47 Cluster: hypothetical protein EcE24377A_3... 42 0.015
UniRef50_UPI00015C4DFC Cluster: hypothetical protein EcHS_A4250;... 40 0.047
UniRef50_Q8E860 Cluster: Lambda repressor superfamily protein; n... 35 1.8
UniRef50_UPI00015C5062 Cluster: hypothetical protein EcHS_A2581;... 27 3.5
UniRef50_UPI0000226479 Cluster: hypothetical protein ECs5564; n=... 34 4.1
UniRef50_Q47342 Cluster: LivJ protein; n=4; Escherichia coli|Rep... 33 5.4
UniRef50_A6S3T2 Cluster: Putative uncharacterized protein; n=1; ... 33 5.4
UniRef50_UPI00015C6023 Cluster: hypothetical protein CKO_03909; ... 33 7.2
UniRef50_Q1RA28 Cluster: Ribonucleoside diphosphage reductase 1,... 33 7.2
UniRef50_P71305 Cluster: Putative uncharacterized protein; n=1; ... 33 9.5
>UniRef50_Q83S36 Cluster: UPF0194 membrane protein ybhG precursor;
n=39; Bacteria|Rep: UPF0194 membrane protein ybhG
precursor - Shigella flexneri
Length = 332
Score = 62.1 bits (144), Expect = 1e-08
Identities = 32/49 (65%), Positives = 34/49 (69%)
Frame = +3
Query: 510 AQDKLRQYRSGNREQDIAQAKAAXXXXXXXXXXXXXIYRDSTLIAPSDG 656
AQDKLRQYRSGNREQDIAQAKA+ +DSTLIAPSDG
Sbjct: 165 AQDKLRQYRSGNREQDIAQAKASLEQAQAQLAQAELNLQDSTLIAPSDG 213
Score = 40.7 bits (91), Expect = 0.036
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +1
Query: 451 ANDLENARSSRDQAQATLK 507
ANDLENARSSRDQAQATLK
Sbjct: 145 ANDLENARSSRDQAQATLK 163
>UniRef50_Q1R8J2 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli UTI89|Rep: Putative uncharacterized
protein - Escherichia coli (strain UTI89 / UPEC)
Length = 102
Score = 52.0 bits (119), Expect = 1e-05
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = -1
Query: 167 MPDATLTASYQAYSFTTY*NCWFCRPDKAFAPHPAFY 57
MPDATL ASYQAY+ CW RPDKAF PHPA +
Sbjct: 1 MPDATLAASYQAYN-----RCWSGRPDKAFTPHPASF 32
>UniRef50_P77130 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 95
Score = 51.6 bits (118), Expect = 2e-05
Identities = 28/43 (65%), Positives = 29/43 (67%)
Frame = +3
Query: 63 CRMRRERLIRPTKPAISIRCKTVGLIRRGKRRIRH*APNAGCG 191
CRMRR+RLIRPT P VGLIR K RIRH AP AGCG
Sbjct: 5 CRMRRKRLIRPTDPV-----PIVGLIRCVKHRIRHCAPIAGCG 42
>UniRef50_P71310 Cluster: Putative uncharacterized protein; n=3;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 103
Score = 51.6 bits (118), Expect = 2e-05
Identities = 25/41 (60%), Positives = 26/41 (63%)
Frame = -1
Query: 173 CSMPDATLTASYQAYSFTTY*NCWFCRPDKAFAPHPAFYAL 51
C+MPDATL ASYQAY CRPDKAF PHPA L
Sbjct: 35 CAMPDATLCASYQAYGLRAK-----CRPDKAFTPHPAVVLL 70
>UniRef50_A2UL04 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli B|Rep: Putative uncharacterized protein
- Escherichia coli B
Length = 49
Score = 50.8 bits (116), Expect = 3e-05
Identities = 25/34 (73%), Positives = 28/34 (82%)
Frame = -3
Query: 264 EKTSRVTRHEIEDAKAVVDRXRCSRRIRHSVLNA 163
+K +RVTR+EI D KAVV R R SRRIRHSVLNA
Sbjct: 16 KKPARVTRYEIADTKAVVGRKRRSRRIRHSVLNA 49
>UniRef50_A7MJ26 Cluster: Putative uncharacterized protein; n=1;
Enterobacter sakazakii ATCC BAA-894|Rep: Putative
uncharacterized protein - Enterobacter sakazakii ATCC
BAA-894
Length = 333
Score = 46.8 bits (106), Expect = 5e-04
Identities = 23/49 (46%), Positives = 30/49 (61%)
Frame = +3
Query: 510 AQDKLRQYRSGNREQDIAQAKAAXXXXXXXXXXXXXIYRDSTLIAPSDG 656
AQDKL QYR+GNR Q+I QA+AA +D+ L++PSDG
Sbjct: 164 AQDKLSQYRAGNRPQEIVQAQAALEQAQAELAQAQLNAQDTRLVSPSDG 212
Score = 35.5 bits (78), Expect = 1.3
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1
Query: 451 ANDLENARSSRDQAQATLK 507
ANDLENARS+RDQ QA LK
Sbjct: 144 ANDLENARSARDQTQAQLK 162
>UniRef50_Q79BJ0 Cluster: Putative uncharacterized protein; n=2;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 80
Score = 46.4 bits (105), Expect = 7e-04
Identities = 24/38 (63%), Positives = 24/38 (63%)
Frame = -1
Query: 167 MPDATLTASYQAYSFTTY*NCWFCRPDKAFAPHPAFYA 54
MPDATL ASYQAY C RPDKAF PHPA A
Sbjct: 16 MPDATLAASYQAYK-----RCQNRRPDKAFTPHPAISA 48
>UniRef50_UPI00015C4E7E Cluster: hypothetical protein EcHS_A0562;
n=2; Escherichia coli HS|Rep: hypothetical protein
EcHS_A0562 - Escherichia coli HS
Length = 88
Score = 45.2 bits (102), Expect = 0.002
Identities = 26/51 (50%), Positives = 31/51 (60%)
Frame = +3
Query: 63 CRMRRERLIRPTKPAISIRCKTVGLIRRGKRRIRH*APNAGCGVNTVXGLQ 215
CRMRR+RLIRPT A R + KRRIR +AGCGVN + GL+
Sbjct: 17 CRMRRKRLIRPTVQAQVCRPD-----KTRKRRIRQWCSDAGCGVNALSGLR 62
>UniRef50_Q8FAY0 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli O6|Rep: Putative uncharacterized
protein - Escherichia coli O6
Length = 52
Score = 43.2 bits (97), Expect = 0.007
Identities = 21/36 (58%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = -1
Query: 167 MPDATLTASYQAYSFTTY*NCW--FCRPDKAFAPHP 66
M DAT+ ASYQAY+ W FCR DKAF PHP
Sbjct: 1 MSDATVAASYQAYARQRNSLIWRDFCRSDKAFTPHP 36
>UniRef50_UPI00015C4E47 Cluster: hypothetical protein
EcE24377A_3473; n=2; Escherichia coli|Rep: hypothetical
protein EcE24377A_3473 - Escherichia coli E24377A
Length = 63
Score = 41.9 bits (94), Expect = 0.015
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = -2
Query: 214 CRPXTVFTPHPAFGAQCLMR 155
CRP FTPHPA GAQCLMR
Sbjct: 23 CRPDKAFTPHPALGAQCLMR 42
Score = 35.1 bits (77), Expect = 1.8
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = -1
Query: 167 MPDATLTASYQAYSFTTY*NCWFCRPDKAFAPHPAFYA 54
MPDA ++ Q Y + CRPDKAF PHPA A
Sbjct: 1 MPDALRSSGLQ-YLLQHVESSCVCRPDKAFTPHPALGA 37
>UniRef50_UPI00015C4DFC Cluster: hypothetical protein EcHS_A4250;
n=1; Escherichia coli HS|Rep: hypothetical protein
EcHS_A4250 - Escherichia coli HS
Length = 78
Score = 40.3 bits (90), Expect = 0.047
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -2
Query: 211 RPXTVFTPHPAFGAQCLMRRL 149
RP FTPHPA GA+CLMRRL
Sbjct: 19 RPDKAFTPHPAIGARCLMRRL 39
>UniRef50_Q8E860 Cluster: Lambda repressor superfamily protein;
n=17; Gammaproteobacteria|Rep: Lambda repressor
superfamily protein - Shewanella oneidensis
Length = 95
Score = 35.1 bits (77), Expect = 1.8
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = -1
Query: 326 MSFFDELKTSLEEAVEIKXCLKKP 255
MS F+EL+ SLEEAVEI LKKP
Sbjct: 1 MSIFNELQASLEEAVEIHHGLKKP 24
>UniRef50_UPI00015C5062 Cluster: hypothetical protein EcHS_A2581;
n=1; Escherichia coli HS|Rep: hypothetical protein
EcHS_A2581 - Escherichia coli HS
Length = 66
Score = 26.6 bits (56), Expect(2) = 3.5
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -1
Query: 167 MPDATLTASYQAY 129
MPDATL ASY AY
Sbjct: 1 MPDATLAASYPAY 13
Score = 26.6 bits (56), Expect(2) = 3.5
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 98 CRPDKAFAPHP 66
CR DKAF PHP
Sbjct: 51 CRADKAFTPHP 61
>UniRef50_UPI0000226479 Cluster: hypothetical protein ECs5564; n=1;
Escherichia coli O157:H7 str. Sakai|Rep: hypothetical
protein ECs5564 - Escherichia coli O157:H7 str. Sakai
Length = 60
Score = 33.9 bits (74), Expect = 4.1
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +2
Query: 62 MPDAARTPYPAYKT 103
MPDAARTPYPAYK+
Sbjct: 46 MPDAARTPYPAYKS 59
>UniRef50_Q47342 Cluster: LivJ protein; n=4; Escherichia coli|Rep:
LivJ protein - Escherichia coli
Length = 170
Score = 33.5 bits (73), Expect = 5.4
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 185 SGIRCSMPDATLTASYQAY-SFTTY*NCWFCRPDKAFAPHPA 63
S + +PDA + Q FT + CRPDKAF PHPA
Sbjct: 131 SDFKSVLPDALRLSGLQCVLQFTDFFGS--CRPDKAFTPHPA 170
>UniRef50_A6S3T2 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 486
Score = 33.5 bits (73), Expect = 5.4
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 6 ELVEPKRIKYKRIAK*CVKCRMRRERLIRPTKPAISIRCKTVGL 137
E R+K++++ C C++RR + + TKP+ RCK G+
Sbjct: 34 EASRKSRVKHQKVKTGCYTCKVRRVKCDQETKPSCK-RCKKTGI 76
>UniRef50_UPI00015C6023 Cluster: hypothetical protein CKO_03909;
n=1; Citrobacter koseri ATCC BAA-895|Rep: hypothetical
protein CKO_03909 - Citrobacter koseri ATCC BAA-895
Length = 52
Score = 33.1 bits (72), Expect = 7.2
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -1
Query: 146 ASYQAYSFTT-Y*NCWFCRPDKAFAPHPAFYALL-RNTLVLDTLRLH 12
A Y AY Y C++ RPDK F P YAL R TL L LR++
Sbjct: 4 APYPAYRLCAKYPGCFY-RPDKVFTPPSGIYALFCRMTLRLSGLRMN 49
>UniRef50_Q1RA28 Cluster: Ribonucleoside diphosphage reductase 1,
beta subunit, B2; n=1; Escherichia coli UTI89|Rep:
Ribonucleoside diphosphage reductase 1, beta subunit, B2
- Escherichia coli (strain UTI89 / UPEC)
Length = 103
Score = 33.1 bits (72), Expect = 7.2
Identities = 19/30 (63%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +3
Query: 60 KCRMRRERLIRPTKPAISIRCK-TVGLIRR 146
+CRMRRERLIRPT + C VGLIRR
Sbjct: 40 ECRMRRERLIRPT-----VLCSDLVGLIRR 64
>UniRef50_P71305 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 123
Score = 32.7 bits (71), Expect = 9.5
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = +3
Query: 54 CVKCRMRRERLIRPTKPA 107
C CRMRRERLIRPT A
Sbjct: 27 CHHCRMRRERLIRPTNGA 44
Score = 32.7 bits (71), Expect = 9.5
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = +3
Query: 54 CVKCRMRRERLIRPTKPA 107
C CRMRRERLIRPT A
Sbjct: 89 CHHCRMRRERLIRPTSGA 106
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,089,723
Number of Sequences: 1657284
Number of extensions: 11878889
Number of successful extensions: 26922
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 26171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26912
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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