Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0033
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1529 - 38016208-38017296                                         31   0.94 
03_02_0984 + 12947444-12947530,12949071-12949127,12949833-129499...    29   3.8  
08_02_1354 - 26337628-26338540,26339638-26339981                       28   8.7  

>01_06_1529 - 38016208-38017296
          Length = 362

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -2

Query: 520 LSCAISALPAP--GRARSGHFPGHL--PNLCGLKRKITTVVSCAAWNWCXR 380
           ++CA++ALPAP   RAR+GH  G L   +  G + K   + + A   W  +
Sbjct: 226 MACAVTALPAPVSCRARAGHCRGRLRYASSDGTRLKFWELKNAATSEWALK 276


>03_02_0984 +
           12947444-12947530,12949071-12949127,12949833-12949904,
           12950050-12950112,12950955-12951131,12951503-12951628,
           12951711-12951777,12952019-12952215,12952617-12952691,
           12954524-12954554,12954714-12954802,12955120-12955188,
           12955306-12955425,12955963-12956081,12956303-12956441,
           12956538-12957038,12957293-12957592,12957694-12957875,
           12958277-12958388,12958953-12959072
          Length = 900

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -1

Query: 329 KMSFFDELKTSLEEAVEIKXCLKKPHG 249
           ++S+FD++K S+E+AVE++  L    G
Sbjct: 487 RLSYFDKIKQSIEDAVELEELLPPKAG 513


>08_02_1354 - 26337628-26338540,26339638-26339981
          Length = 418

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 172 HRMPDAA*TPXPVYNSLSILNFVAGHP*G 258
           HR P AA T   + +S+ ++ F+A HP G
Sbjct: 59  HRAPTAAATVVGLLSSIDVVAFLANHPGG 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,350,846
Number of Sequences: 37544
Number of extensions: 355296
Number of successful extensions: 834
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)