Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0033
(728 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 31 1.3
SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37) 31 1.3
SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4) 31 1.3
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40) 31 1.3
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_10526| Best HMM Match : CUE (HMM E-Value=6.5) 31 1.3
SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_4159| Best HMM Match : Vpu (HMM E-Value=2) 31 1.3
SB_28116| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_17668| Best HMM Match : 7tm_1 (HMM E-Value=0.017) 29 3.9
SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6) 29 5.1
SB_33854| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 32.7 bits (71), Expect = 0.31
Identities = 15/21 (71%), Positives = 15/21 (71%)
Frame = -1
Query: 728 NCNTTHYRAKWVTGPGSTARV 666
NCNTTHYRA W STARV
Sbjct: 92 NCNTTHYRANW----SSTARV 108
>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 728 NCNTTHYRAKW 696
NCNTTHYRA W
Sbjct: 14 NCNTTHYRANW 24
>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 728 NCNTTHYRAKW 696
NCNTTHYRA W
Sbjct: 70 NCNTTHYRANW 80
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 728 NCNTTHYRAKW 696
NCNTTHYRA W
Sbjct: 638 NCNTTHYRANW 648
>SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 728 NCNTTHYRAKW 696
NCNTTHYRA W
Sbjct: 49 NCNTTHYRANW 59
>SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)
Length = 257
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 728 NCNTTHYRAKW 696
NCNTTHYRA W
Sbjct: 11 NCNTTHYRANW 21
>SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)
Length = 117
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 728 NCNTTHYRAKW 696
NCNTTHYRA W
Sbjct: 51 NCNTTHYRANW 61
>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1907
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 728 NCNTTHYRAKW 696
NCNTTHYRA W
Sbjct: 1889 NCNTTHYRANW 1899
>SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 728 NCNTTHYRAKW 696
NCNTTHYRA W
Sbjct: 49 NCNTTHYRANW 59
>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 728 NCNTTHYRAKW 696
NCNTTHYRA W
Sbjct: 11 NCNTTHYRANW 21
>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
Length = 768
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 728 NCNTTHYRAKW 696
NCNTTHYRA W
Sbjct: 43 NCNTTHYRANW 53
>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 728 NCNTTHYRAKW 696
NCNTTHYRA W
Sbjct: 70 NCNTTHYRANW 80
>SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)
Length = 281
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 728 NCNTTHYRAKW 696
NCNTTHYRA W
Sbjct: 81 NCNTTHYRANW 91
>SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 728 NCNTTHYRAKW 696
NCNTTHYRA W
Sbjct: 57 NCNTTHYRANW 67
>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
Length = 779
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 728 NCNTTHYRAKW 696
NCNTTHYRA W
Sbjct: 81 NCNTTHYRANW 91
>SB_28116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 530 LTQFILCYFSVACAWSREERAFSRSFAEF 444
++ I+ YF+ SRE+RAF+RS A +
Sbjct: 46 ISNAIIIYFTATARRSREQRAFNRSHAAY 74
>SB_17668| Best HMM Match : 7tm_1 (HMM E-Value=0.017)
Length = 231
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 530 LTQFILCYFSVACAWSREERAFSRSFAEF 444
++ I+ YF+ SRE+RAF+RS A +
Sbjct: 46 ISNAIIIYFTATARRSREQRAFNRSHAAY 74
>SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)
Length = 237
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 728 NCNTTHYRA-KWVTGPGSTARVNSVP 654
NCNTTHYRA + T G +R + P
Sbjct: 88 NCNTTHYRANRSSTSGGGRSRTSGSP 113
>SB_33854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Frame = -2
Query: 562 AMSCSRLPERY*RNLSCAISALPAP---GRARSGHFPGHLPN--LCGLKRKITTVVSCAA 398
A S LPE NL+C+ P P GH H P+ + + R ++ V +C A
Sbjct: 249 ASSSPTLPENSQVNLTCSADGTPLPTFTWIGPQGHTVAHRPSYTIPMVHRDMSGVYTCVA 308
Query: 397 WNWCXR 380
+ C R
Sbjct: 309 TDGCGR 314
>SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = -2
Query: 556 SCSRLPERY*RNLSCAISALPAP---GRARSGHFPGHLPN--LCGLKRKITTVVSCAAWN 392
SC + ER NL+C+ P P + GH H P+ + + R+++ V +C A +
Sbjct: 20 SCLTVTERDQVNLTCSADGTPPPTFTWISPQGHTVAHGPSYTIPMVHREMSGVYTCVATD 79
Query: 391 WCXR 380
C R
Sbjct: 80 GCGR 83
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,532,838
Number of Sequences: 59808
Number of extensions: 386034
Number of successful extensions: 2336
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2336
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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