Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0033
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.55 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.73 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 50  VMRKMPDAARTPYPAYKTSNFNTL*NCRPDKTR*ASHQALSTECRM 187
           +M K+P   RTP  +Y  S F  L N +    +  +  A  + C M
Sbjct: 530 IMSKLPKTVRTPTDSYIRSFFELLQNPKVSNEQFLNTAATLSFCEM 575


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 566 LSDVLFTVTGTVLTQFILCYFSVACAW 486
           + ++ + + GT+L  +ILCYF   C W
Sbjct: 169 VGNIRWELAGTLLLVWILCYF---CIW 192


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 578 GCFRLSDVLFTVTGTVLTQFILCYFSVACAW 486
           G   +  + + + GT+   +I+CYF   C W
Sbjct: 198 GIENIGSIRWELAGTLAVVWIMCYF---CIW 225


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 578 GCFRLSDVLFTVTGTVLTQFILCYFSVACAW 486
           G   +  + + + GT+   +I+CYF   C W
Sbjct: 251 GIENIGSIRWELAGTLAVVWIMCYF---CIW 278


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 505 SALPAPGRARSGHFP 461
           SA P+PG    GH P
Sbjct: 112 SASPSPGMGHMGHTP 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,756
Number of Sequences: 438
Number of extensions: 3868
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)