Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0032
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.9  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   5.9  
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    25   7.8  
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce...    25   7.8  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 398 QKH*YICTRFVQPNYLKLMCKCST 469
           Q+H YI T FVQ N L +   CST
Sbjct: 870 QEH-YIITPFVQKNLLNIARACST 892


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 126 GSAYTHLESDSLLNYQGVYKMKQHFFLCRNNKNPI 22
           G  YT +  + +LN + V K+   +FL  N K  +
Sbjct: 588 GLTYTTMSDERILNPKEVQKIGDEYFLISNPKEKV 622


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 489 SQSFVQLVLHLHMSLR*LGCTNRVHMYQCF 400
           +++F +L+ HL+  LR     NR+H +Q F
Sbjct: 389 TKAFERLLPHLYYYLRGPAFLNRIHYWQTF 418


>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 487 TEITLHRFSYCETIYASQSSSKFNPRAAASGDEPSFNGVL 606
           +E T H  S CE    S SS +F+  +  SGD PS   +L
Sbjct: 255 SETTEHVGSDCEFTRKSSSSVEFSDHSQDSGD-PSQQNIL 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,799
Number of Sequences: 5004
Number of extensions: 48083
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)