Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0032
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55856-4|AAK68354.1|  443|Caenorhabditis elegans Synaptotagmin p...    28   5.5  
AJ303370-1|CAC33881.1|  155|Caenorhabditis elegans synaptotagmin...    28   5.5  
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>U55856-4|AAK68354.1|  443|Caenorhabditis elegans Synaptotagmin
           protein 1, isoform b protein.
          Length = 443

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -1

Query: 549 RRRLRRIYSFTIRKTMQSYFSQSFVQLVLHLH 454
           R+RL++  +   RKT+  YF++SFV   L LH
Sbjct: 341 RKRLKKKKTNIKRKTLNPYFNESFVFDKLPLH 372


>AJ303370-1|CAC33881.1|  155|Caenorhabditis elegans synaptotagmin 1
           protein.
          Length = 155

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -1

Query: 549 RRRLRRIYSFTIRKTMQSYFSQSFVQLVLHLH 454
           R+RL++  +   RKT+  YF++SFV   L LH
Sbjct: 60  RKRLKKKKTNIKRKTLNPYFNESFVFDKLPLH 91


>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 139 FKKLRVCLYPS*VRQSVKLSGSLQN 65
           FK+L +C YP   R  V +SG+++N
Sbjct: 664 FKRLNLCQYPRETRIVVSISGTVRN 688


>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 139 FKKLRVCLYPS*VRQSVKLSGSLQN 65
           FK+L +C YP   R  V +SG+++N
Sbjct: 664 FKRLNLCQYPRETRIVVSISGTVRN 688


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,136,108
Number of Sequences: 27780
Number of extensions: 265625
Number of successful extensions: 505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)