Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0032
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   0.69 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.7  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +2

Query: 512 LIVKLYMRLSRLLNLTREPQLPVMN----HRSMEY*LQW 616
           ++VKL +RLS+L++L  + Q+   N    H   ++  QW
Sbjct: 46  VVVKLGLRLSQLIDLNLKDQILTTNVWLEHEWQDHKFQW 84


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 120 AYTHLESDSLLNYQGVYKMKQHFFLCR 40
           AYT + S+  L  Q V + ++ F+LC+
Sbjct: 761 AYTKILSNGTLLLQHVKEDREGFYLCQ 787


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 120 AYTHLESDSLLNYQGVYKMKQHFFLCR 40
           AYT + S+  L  Q V + ++ F+LC+
Sbjct: 757 AYTKILSNGTLLLQHVKEDREGFYLCQ 783


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,660
Number of Sequences: 438
Number of extensions: 3051
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)