Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0031
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 47 1e-05
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 47 1e-05
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 46 3e-05
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 44 1e-04
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 44 1e-04
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 40 0.001
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 40 0.002
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 37 0.012
09_01_0004 - 133130-133897 28 5.5
02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463... 27 9.7
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +2
Query: 2 KNYFKIFAIRKKV-KMTDKPKRPMSAYMLWLNSAREQXKSENPGLR-VXEIAKKGGEIWK 175
+ +F++ + K K +KPKRP SA+ +++ R+ K ++P ++ V I K GG+ WK
Sbjct: 16 RGWFRLSVRKTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWK 75
Query: 176 SMKD 187
SM D
Sbjct: 76 SMTD 79
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/47 (44%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Frame = +2
Query: 53 KPKRPMSAYMLWLNSAREQXKSENPGLR-VXEIAKKGGEIWKSMKDK 190
K KRP +A+ L+++ R++ K+E+P + V +AK+GGE WKSM D+
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDE 137
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = +2
Query: 32 KKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSM 181
KK K + PKR M+ +M + + R K+ NP L EIAKK GE+W+ M
Sbjct: 591 KKKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKM 640
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +2
Query: 32 KKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSM 181
KK K + PKR ++ +M + + R K+ NP L EIAKK GE W+ M
Sbjct: 550 KKKKDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKM 599
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +2
Query: 29 RKKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLR-VXEIAKKGGEIWKSMKDK 190
RKK + KPKRP SA+ ++++ R++ ++ +P + V ++K GE W++M ++
Sbjct: 24 RKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQ 78
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = +2
Query: 29 RKKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKD 187
+KK K KPK+PMSAY ++ R +E V EI + GE WK+M +
Sbjct: 276 KKKEKDPSKPKQPMSAYFVYTQQRRAALVAEKK--NVPEIGRITGEEWKAMSE 326
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = +2
Query: 50 DKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSM--KDKTEWXXXXXXXX 223
++PK+P S+++L+ AR Q E PG+ + WK + +K W
Sbjct: 412 NRPKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKAAEAM 471
Query: 224 XXXXXDLESYMPMAVVAKG 280
D+E Y A G
Sbjct: 472 AAYKRDMEEYTKAAASGGG 490
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 35 KVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSM 181
K K + K+P AY+LW + K E+P E++ G WK++
Sbjct: 150 KGKAGHERKKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKAL 198
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 11 FKIFAIRKKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLR-VXEIAKKGGEIWKSMKD 187
FK RKK KPKR ++ + +L R Q ++P + V + K GE W++M D
Sbjct: 10 FKAAGKRKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSD 69
Query: 188 K 190
+
Sbjct: 70 E 70
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 53 KPKRPMSAYMLWLNSAREQXKSENPGLR-VXEIAKKGGEIWKSM 181
+PK+P +A+ ++ R+ K ENP ++ + E+ K GE W +M
Sbjct: 48 RPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTM 91
>09_01_0004 - 133130-133897
Length = 255
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 249 LTCQWRWWRRGRKEGSKTREKG 314
L C+ RWWRR R+ G G
Sbjct: 93 LRCRERWWRRRRRTGDAAEAAG 114
>02_01_0618 -
4629776-4630037,4630188-4630330,4631200-4631254,
4631539-4631603,4631714-4631857,4632141-4632194,
4632363-4632410,4632466-4632541,4632624-4632722,
4633000-4633097,4633615-4633719,4633816-4633924,
4634137-4634252,4634332-4634496
Length = 512
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3
Query: 162 PPFLAISXTLKPGFSDLXCSLALFNHSMYADIGRF 58
PP + S L G C + NH YAD GRF
Sbjct: 45 PPAASSSSLLPVGRKPRVCVPGVPNHLTYADFGRF 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,672,963
Number of Sequences: 37544
Number of extensions: 199845
Number of successful extensions: 504
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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