Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0031
(644 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 76 3e-14
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34) 47 1e-05
SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 46 3e-05
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 44 1e-04
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 44 1e-04
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28) 42 3e-04
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 42 3e-04
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 42 3e-04
SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 7e-04
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 41 7e-04
SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26) 39 0.003
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08) 38 0.005
SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22) 37 0.016
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 37 0.016
SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24) 34 0.086
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031) 34 0.11
SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021) 33 0.15
SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08) 33 0.15
SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10) 28 5.7
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 75.8 bits (178), Expect = 3e-14
Identities = 30/56 (53%), Positives = 42/56 (75%)
Frame = +2
Query: 32 KKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDKTEW 199
KK K + PKR MSAYMLWLN R++ K +NPG+ V E++K GE+WK++ DK++W
Sbjct: 534 KKKKDPNAPKRAMSAYMLWLNDTRQEIKDKNPGISVTEVSKVAGEMWKNLTDKSKW 589
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +2
Query: 38 VKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKD 187
VK + KRPM+A+M+W R + ENP + EI+K+ G WK + D
Sbjct: 321 VKPVEHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLAD 370
>SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)
Length = 179
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +2
Query: 38 VKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKD 187
VK + KRPM+A+M+W R + ENP + EI+K+ G WK + D
Sbjct: 4 VKPVEHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLAD 53
>SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 29 RKKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSM--KDKTEW 199
+K+ K +KPKR +SAY ++N R+ K +NP ++K GE+W M DKT++
Sbjct: 93 KKQTKDPNKPKRCLSAYFHFINLKRDDVKKDNPNASGGALSKVLGEMWSKMTDDDKTQY 151
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +2
Query: 41 KMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSM--KDKTEWXXXXX 214
K +KPK SAY +L RE+ + E + + +K E WK+M ++K +
Sbjct: 7 KDPNKPKGAKSAYNFFLQDQREKLQREEGKFSLADFSKVSAEKWKNMSEEEKETFVQKAG 66
Query: 215 XXXXXXXXDLESYMPMAVVAKGAKRRLK 298
+++SY P G K+R K
Sbjct: 67 KDKERFKEEMQSYTPPPSEESGKKKRKK 94
>SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 35 KVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDK 190
K D+ KRPM+A+M+W R + +NP + EI+K+ G WK + ++
Sbjct: 782 KANSADRVKRPMNAFMVWSRERRRKMAQDNPKMHNSEISKRLGSEWKLLSEQ 833
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +2
Query: 47 TDKP--KRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKD 187
T KP KRPM+A+M+W +AR + + P L E++K G++WK + D
Sbjct: 59 TQKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWKLLND 107
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 43.6 bits (98), Expect = 1e-04
Identities = 15/54 (27%), Positives = 34/54 (62%)
Frame = +2
Query: 29 RKKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDK 190
++K K+ +P +P+SAY ++ + + +NP + EIAK G++W+++ ++
Sbjct: 916 KRKTKIEGEPPKPLSAYQIFFKETQAAIRLQNPSAQFGEIAKIVGQMWENLPEE 969
>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
Length = 523
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 29 RKKV-KMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSM 181
RKK K + PK P++ Y+ +LN RE+ +SENP L E+ + G +W +
Sbjct: 167 RKKAHKDVNAPKAPLTGYVRFLNEHREKVRSENPDLPFHEVTRILGNMWSQL 218
>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
Length = 245
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +2
Query: 50 DKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKD 187
D KRP++++M+W R ENP +R EI+K G+ W+ M +
Sbjct: 8 DHVKRPLNSFMVWAKEKRRAMNRENPKMRNAEISKILGDEWRKMPE 53
>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 267
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2
Query: 59 KRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSM 181
KRPM+A+M+W + R Q +ENP L +I+K G W+ +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKL 48
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2
Query: 59 KRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSM 181
KRPM+A+M+W + R Q +ENP L +I+K G W+ +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKL 48
>SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +2
Query: 41 KMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSM 181
K K KRPM+++M+W SAR + + P + E++K G++W+ +
Sbjct: 106 KKDPKVKRPMNSFMVWAQSARRKLAEQYPHVHNAELSKMLGKLWRML 152
>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +2
Query: 32 KKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKD 187
KK KRPM+A+M+W R + E+P + EI+K+ G+ WK + +
Sbjct: 37 KKKSDMQHVKRPMNAFMVWSQIERRKMAEEHPDMHNAEISKRLGKRWKLLSE 88
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 59 KRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDK 190
KRPM+++M+W R + ENP L EI+K G+ W + K
Sbjct: 95 KRPMNSFMIWAKVMRRKFAEENPKLHNAEISKLLGKAWNELTTK 138
>SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +2
Query: 59 KRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDK 190
KRPM+A+M+W R E P + EI+K G WK+MKD+
Sbjct: 10 KRPMNAFMVWSKERRRIKSQECPRMHNSEISKILGCEWKAMKDE 53
>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +2
Query: 29 RKKVKMTDKPKRPMSAYMLW---LNSAREQXKSENPGLRVXEIAKKGGEIWKSM 181
RKK +KPK P++ Y+ + LNS RE K ++P L EI K G+ W S+
Sbjct: 185 RKKEYDLNKPKAPVTGYVHYVRFLNSRRESVKHQHPHLTFPEITKMLGQEWNSL 238
>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 47 TDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSM 181
T++ KRPM+A+M+W R + NP L E++K G W+++
Sbjct: 363 TERIKRPMNAFMVWAQVERRRLADANPELHNAELSKMLGLTWRAL 407
>SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +2
Query: 41 KMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSM 181
K D KRPM+AYM+W R + E P + EI+K+ G W S+
Sbjct: 3 KPGDHIKRPMNAYMVWSRKERRRIAEECPRMLNSEISKRLGLEWNSL 49
>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 59 KRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSM 181
KRPM+ +M+W R Q ENPG+ ++K G WK +
Sbjct: 9 KRPMNCFMVWSREKRCQILQENPGINNARLSKLLGMAWKKL 49
>SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)
Length = 245
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/48 (31%), Positives = 30/48 (62%)
Frame = +2
Query: 47 TDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDK 190
++K KRP++A++LW R +ENP + +I++K G W+ + ++
Sbjct: 16 SEKIKRPLNAFILWSKKRRRVIANENPQMHNFDISRKLGLEWQKLTEE 63
>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
Length = 324
Score = 38.3 bits (85), Expect = 0.005
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +2
Query: 56 PKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKD 187
P++P+ YM + +Q K++NP ++ +I K G++W+ + D
Sbjct: 28 PEKPLMPYMRYSRKVWDQVKNQNPDFKLWDIGKIIGQMWRDLDD 71
>SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 53 KPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDKTE 196
K KRPM+A+M+W R P EI+ + GEIW + + +
Sbjct: 100 KVKRPMNAFMIWARLHRSTIAKRYPQANNAEISIRLGEIWNDLSSEQQ 147
>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
Length = 299
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 65 PMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDK 190
P+SA+ LW N AR+ NP + ++ KK WK + +K
Sbjct: 230 PLSAFELWANQARKDLLVSNPDISAKKLKKKLKRKWKEIDEK 271
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 50 DKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDK 190
++PK P+++Y + R + + P L+ E+A K + W+ M ++
Sbjct: 150 NQPKMPLTSYFRYCQKHRAKLAKKYPNLKSTELAAKLSKKWRKMSEE 196
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 36.7 bits (81), Expect = 0.016
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 2 KNYFKIFAIRKKVKMTDKPKRPMSAYMLWLNSAREQ--XKSENPGLRVXEIAKKGGEIWK 175
+ Y K K DKPKRP +AY L+L + R++ K+ G ++ +A GE W+
Sbjct: 559 QRYLKESGKNDPKKDPDKPKRPPTAYFLFLAAFRKEMAGKALEDGKKIPSLA---GERWR 615
Query: 176 SMKDK 190
M D+
Sbjct: 616 EMSDE 620
Score = 31.9 bits (69), Expect = 0.46
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +2
Query: 29 RKKVKMTDKP--KRPMSAYMLWLNSAREQXKSEN-----PGLRVXEIAKKGGEIWKSMKD 187
RKK D P KR SAY+ + + R + K+++ P + E+AK GE WK + D
Sbjct: 485 RKKKAKGDGPVVKRASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLND 544
Query: 188 K 190
+
Sbjct: 545 E 545
>SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)
Length = 201
Score = 34.3 bits (75), Expect = 0.086
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 59 KRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDK 190
KRPM+A+M+W + R + + P + EI+K G W + ++
Sbjct: 10 KRPMNAFMVWSRTERRKLALKYPNMLNCEISKLLGAEWSRLSEE 53
>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
Length = 406
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 50 DKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMK--DKTEW 199
D+ + + + LWL R+Q + ENP + ++ K + WK + +K W
Sbjct: 327 DRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGLDSVEKKVW 378
>SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)
Length = 200
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 50 DKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSM 181
D+ + + + LWL R+Q + ENP + ++ K + WK +
Sbjct: 34 DRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGL 77
>SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08)
Length = 271
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 59 KRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSM 181
K PM+A+M+ R+ S NPG+ E +K G WK +
Sbjct: 10 KSPMNAFMVCSRGKRKHYASINPGMHNSEFSKSLGPEWKML 50
>SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 53 KPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMK 184
K KRP A+ + ++ K ENP L+ EI K + W +++
Sbjct: 305 KHKRPTPAFFRFRQDYADKVKEENPHLKDAEIRKHLSDQWANLE 348
>SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10)
Length = 145
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 59 KRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKS 178
KR S Y+L+ + R + E+P EI++ GE W++
Sbjct: 36 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRN 75
>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 59 KRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKS 178
KR S Y+L+ + R + E+P EI++ GE W++
Sbjct: 1269 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRN 1308
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,902,599
Number of Sequences: 59808
Number of extensions: 243695
Number of successful extensions: 562
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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