Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0031
(644 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 51 6e-07
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 51 8e-07
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 51 8e-07
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 50 2e-06
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 46 2e-05
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 44 1e-04
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 41 9e-04
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 37 0.011
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 37 0.011
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 37 0.011
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 37 0.011
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 37 0.011
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 37 0.014
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 37 0.014
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 37 0.014
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 37 0.014
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 33 0.13
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 32 0.40
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 32 0.40
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 32 0.40
AF098989-2|AAK18954.3| 346|Caenorhabditis elegans Hypothetical ... 31 0.53
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Frame = +2
Query: 32 KKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMK--DKTEW 199
KK K ++PKR +AY++W N+ R K + G + ++AKK G WKSM DK EW
Sbjct: 553 KKTKDPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSMSADDKKEW 608
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 50.8 bits (116), Expect = 8e-07
Identities = 24/73 (32%), Positives = 35/73 (47%)
Frame = +2
Query: 35 KVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDKTEWXXXXX 214
K K + PKR MSA+ W+ RE+ K PG+ V ++AK G W + DK+ W
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKSRWEKKAA 78
Query: 215 XXXXXXXXDLESY 253
D+ +Y
Sbjct: 79 DDKKRYEVDIANY 91
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 50.8 bits (116), Expect = 8e-07
Identities = 24/73 (32%), Positives = 35/73 (47%)
Frame = +2
Query: 35 KVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDKTEWXXXXX 214
K K + PKR MSA+ W+ RE+ K PG+ V ++AK G W + DK+ W
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKSRWEKKAA 78
Query: 215 XXXXXXXXDLESY 253
D+ +Y
Sbjct: 79 DDKKRYEVDIANY 91
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Frame = +2
Query: 32 KKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMK--DKTEW 199
KK K + PKR SAYM W ++R + K + G V ++AKKGG WK+M DK +W
Sbjct: 548 KKDKDPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTMSSDDKKKW 603
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +2
Query: 41 KMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDK 190
K D+ KRPM+A+M+W R++ ENP + EI+K+ G WK + ++
Sbjct: 55 KNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQ 104
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 50 DKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDK 190
D KRPM+A+M+W R + +NP + EI+K+ G WK + ++
Sbjct: 46 DHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQ 92
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 40.7 bits (91), Expect = 9e-04
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +2
Query: 41 KMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDK 190
K ++ KRPM+A+M+W R + P + EI+K+ G W+S+ D+
Sbjct: 88 KSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDE 137
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 29 RKKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKD 187
R + K + KRPM+A+M+W R + P + I+K G WK M +
Sbjct: 169 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 221
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 29 RKKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKD 187
R + K + KRPM+A+M+W R + P + I+K G WK M +
Sbjct: 166 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 218
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 29 RKKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKD 187
R + K + KRPM+A+M+W R + P + I+K G WK M +
Sbjct: 272 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 324
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 29 RKKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKD 187
R + K + KRPM+A+M+W R + P + I+K G WK M +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 29 RKKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKD 187
R + K + KRPM+A+M+W R + P + I+K G WK M +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 29 RKKVKMTDK-PKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDKTE 196
RK+ K PKR +SA+ + R + ++ +P +V ++A++ G++WK + +T+
Sbjct: 124 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 180
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 29 RKKVKMTDK-PKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDKTE 196
RK+ K PKR +SA+ + R + ++ +P +V ++A++ G++WK + +T+
Sbjct: 123 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 179
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 29 RKKVKMTDK-PKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDKTE 196
RK+ K PKR +SA+ + R + ++ +P +V ++A++ G++WK + +T+
Sbjct: 125 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 181
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 29 RKKVKMTDK-PKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDKTE 196
RK+ K PKR +SA+ + R + ++ +P +V ++A++ G++WK + +T+
Sbjct: 125 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 181
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 56 PKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKD 187
P+RP+ YM + + ++ENP ++ +I K G+ W + D
Sbjct: 26 PERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPD 69
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 44 MTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDK 190
MT K + S Y+L+ R++ ENP E++K G WK + ++
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 44 MTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDK 190
MT K + S Y+L+ R++ ENP E++K G WK + ++
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 44 MTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDK 190
MT K + S Y+L+ R++ ENP E++K G WK + ++
Sbjct: 75 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 123
>AF098989-2|AAK18954.3| 346|Caenorhabditis elegans Hypothetical
protein F47G6.3 protein.
Length = 346
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +3
Query: 150 PKKAVKFGNQ*KTKLNGNRKLPRPRSNMQKT*NLTCQWRWWRRGRKEGSKTREKGQE 320
PK+ + Q +L+ P+P+S +Q + R + G+K G+K +E+ +E
Sbjct: 8 PKELKEDSTQQSDELSQKEPRPKPKSKVQTAERIPSSKRRSKSGKKRGTKEKERSKE 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,392,497
Number of Sequences: 27780
Number of extensions: 187666
Number of successful extensions: 447
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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