Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0031
(644 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 50 1e-06
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 49 2e-06
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 46 2e-05
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 45 4e-05
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 45 5e-05
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 45 5e-05
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 45 5e-05
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 44 9e-05
At3g28730.1 68416.m03587 structure-specific recognition protein ... 44 1e-04
At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 40 0.002
At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 38 0.006
At5g23405.2 68418.m02742 high mobility group (HMG1/2) family pro... 32 0.37
At5g23405.1 68418.m02741 high mobility group (HMG1/2) family pro... 32 0.37
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/53 (43%), Positives = 34/53 (64%)
Frame = +2
Query: 32 KKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDK 190
KK+K KPK+P+SAY+++ N R K EN V E+AK GE WK++ ++
Sbjct: 238 KKIKDPLKPKQPISAYLIYANERRAALKGENKS--VIEVAKMAGEEWKNLSEE 288
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 29 RKKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSM 181
+KK K + KRP + Y+LW + K +NP E + G WK +
Sbjct: 120 KKKKKDCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGI 170
Score = 32.3 bits (70), Expect = 0.28
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 50 DKPKRPMSAYMLWLNSAREQXKSENPGL 133
+KPK+P S+Y L+ AR+ E+PG+
Sbjct: 370 NKPKKPTSSYFLFCKDARKSVLEEHPGI 397
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/54 (37%), Positives = 36/54 (66%)
Frame = +2
Query: 29 RKKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDK 190
+K ++KPKRP++A+ ++++ R+ KSE+ G + AK GGE WKS+ ++
Sbjct: 106 KKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEE 159
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +2
Query: 32 KKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDK 190
KK K KPK P+SA++++ N R + EN V E+AK GE WK++ DK
Sbjct: 247 KKEKDPLKPKHPVSAFLVYANERRAALREENKS--VVEVAKITGEEWKNLSDK 297
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +2
Query: 23 AIRKKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSM 181
A +KK K + KRP S+Y+LW + K ENP E + G WKS+
Sbjct: 127 ANKKKKKDCPETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSL 179
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 50 DKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKDK 190
+KPK+P S+Y L+ R++ E PG + WK + ++
Sbjct: 377 NKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEE 423
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 41 KMTDKPKRPMSAYMLWLNSAREQXKSENP-GLRVXEIAKKGGEIWKSMKD 187
K +KPKRP SA+ +++ RE K ENP V + K G+ WKS+ D
Sbjct: 33 KDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSD 82
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 29 RKKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLR-VXEIAKKGGEIWKSM 181
+K K +KPKR SA+ ++L R K ENP ++ V + K GG+ WKSM
Sbjct: 44 KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSM 95
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 29 RKKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLR-VXEIAKKGGEIWKSM 181
+K K +KPKR SA+ ++L R K ENP ++ V + K GG+ WKSM
Sbjct: 44 KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSM 95
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Frame = +2
Query: 29 RKKVKMTDK-PKRPMSAYMLWLNSAREQXKSENPGLR-VXEIAKKGGEIWKSM 181
+K VK+ K PK+P +A+ +L+ R+Q + ENP ++ + EI K GE WK+M
Sbjct: 53 KKPVKLQTKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTM 105
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 41 KMTDKPKRPMSAYMLWLNSAREQXKSENP-GLRVXEIAKKGGEIWKSMKD 187
K +KPKRP SA+ +++ R K E+P V + K GGE WKS+ D
Sbjct: 30 KDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSD 79
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +2
Query: 32 KKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSM 181
KK K + PKR MS +M + R+ K E+PG+ E+ K G+ W+ M
Sbjct: 554 KKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQM 603
>At2g17560.1 68415.m02032 high mobility group protein gamma
(HMGgamma) / HMG protein gamma nearly identical to HMG
protein (HMGgamma) [Arabidopsis thaliana] GI:2832355
Length = 138
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 29 RKKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLR-VXEIAKKGGEIWKSMKDK 190
+K K ++PKRP SA+ ++L R++ NP + V + K G WK+M D+
Sbjct: 26 KKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDE 80
>At4g35570.1 68417.m05054 high mobility group protein delta
(HMGdelta) / HMG protein delta identical to HMG protein
(HMGdelta) [Arabidopsis thaliana] GI:2832363
Length = 125
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 26 IRKKVKMTDKPKRPMSAYMLWLNSAREQXKSENPGLR-VXEIAKKGGEIWKSMKDK 190
+ KK K ++PK+P S + ++L+ R++ NP + V + + G+ WK+M ++
Sbjct: 24 VGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEE 79
>At5g23405.2 68418.m02742 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 148
Score = 31.9 bits (69), Expect = 0.37
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 35 KVKMTDKPKRPMSA--YMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKD 187
K K T+K K S + +++N R+ +++ G V E +K G E+WKSM +
Sbjct: 53 KKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTE 105
>At5g23405.1 68418.m02741 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 149
Score = 31.9 bits (69), Expect = 0.37
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 35 KVKMTDKPKRPMSA--YMLWLNSAREQXKSENPGLRVXEIAKKGGEIWKSMKD 187
K K T+K K S + +++N R+ +++ G V E +K G E+WKSM +
Sbjct: 54 KKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTE 106
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,636,351
Number of Sequences: 28952
Number of extensions: 172616
Number of successful extensions: 413
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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