Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0030
         (599 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    25   0.49 
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    23   2.6  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   6.0  

>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 557 LFTRVLLLHFKNCMFI*VYLIAENHKVNYEISYSFNLKLYVIC 429
           LFT  L+L   + +F+  Y+I +N  ++  +S    LK YV C
Sbjct: 2   LFTVFLVLTCAHVVFLEEYVIPDNIDIDDILSNERLLKNYVNC 44


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 379 AIRVSTSTFLGQRHVTKTI 323
           A+R+S + F G RH  +T+
Sbjct: 171 AVRLSAANFFGARHGLETL 189


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 171 NSTIFVIQGRPS*SRP 218
           NS +FVI+G+P+ + P
Sbjct: 84  NSRLFVIRGQPADALP 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,426
Number of Sequences: 336
Number of extensions: 2441
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)