Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0030
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 27 2.1
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 6.4
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 6.4
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 6.4
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 6.4
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 6.4
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 6.4
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 8.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 8.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 8.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 8.5
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 441 LCYMS*SNIFDISTIYKNTSALSEFQQAHS 352
LCY+ +I D + I+KN ++++E+ A S
Sbjct: 329 LCYVQCPSIEDFNKIWKNQASMNEWDWAES 358
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 407 SAQYTKIHQRYQSFNKHIPRATPRNKN 327
+A Y K H+R+Q NK++ + + KN
Sbjct: 194 TASYGKTHKRFQPQNKNLGKESLSKKN 220
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 407 SAQYTKIHQRYQSFNKHIPRATPRNKN 327
+A Y K H+R+Q NK++ + + KN
Sbjct: 194 TASYGKTHKRFQPQNKNLGKESLSKKN 220
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 407 SAQYTKIHQRYQSFNKHIPRATPRNKN 327
+A Y K H+R+Q NK++ + + KN
Sbjct: 194 TASYGKTHKRFQPQNKNLGKESLSKKN 220
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 407 SAQYTKIHQRYQSFNKHIPRATPRNKN 327
+A Y K H+R+Q NK++ + + KN
Sbjct: 194 TASYGKTHKRFQPQNKNLGKESLSKKN 220
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 407 SAQYTKIHQRYQSFNKHIPRATPRNKN 327
+A Y K H+R+Q NK++ + + KN
Sbjct: 194 TASYGKTHKRFQPQNKNLGKESLSKKN 220
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 407 SAQYTKIHQRYQSFNKHIPRATPRNKN 327
+A Y K H+R+Q NK++ + + KN
Sbjct: 194 TASYGKTHKRFQPQNKNLGKESLSKKN 220
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 407 SAQYTKIHQRYQSFNKHIPRATPRNKN 327
+A Y K H+R+Q NK++ + + KN
Sbjct: 194 TASYGKTHKRFQLQNKNLGKESLSKKN 220
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 407 SAQYTKIHQRYQSFNKHIPRATPRNKN 327
+A Y K H+R+Q NK++ + + KN
Sbjct: 194 TASYGKTHKRFQLQNKNLGKESLSKKN 220
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 407 SAQYTKIHQRYQSFNKHIPRATPRNKN 327
+A Y K H+R+Q NK++ + + KN
Sbjct: 194 TASYGKTHKRFQLQNKNLGKESLSKKN 220
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 407 SAQYTKIHQRYQSFNKHIPRATPRNKN 327
+A Y K H+R+Q NK++ + + KN
Sbjct: 194 TASYGKTHKRFQLQNKNLGKESLSKKN 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,991
Number of Sequences: 5004
Number of extensions: 40801
Number of successful extensions: 87
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -