Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0030
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0062 + 20370608-20370977,20371062-20371541,20371661-203717...    29   2.8  
07_03_1176 + 24567720-24570932                                         28   5.0  
12_02_0606 - 20926179-20926594,20934542-20934707,20934788-209349...    28   6.6  
10_01_0026 - 351737-353443                                             28   6.6  

>03_05_0062 +
           20370608-20370977,20371062-20371541,20371661-20371731,
           20371836-20371912,20372076-20372223,20372346-20372507,
           20372743-20372940
          Length = 501

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
 Frame = +2

Query: 164 LTELHDLCHPRPAEL-IASCTSLVRE*YEI*LTNLFLDCNWLRITHNYVSLLMFNSFCYV 340
           LT LH+ CHPR     I S   L+ + +E  + +  L   +   +  +VS  +  +F Y+
Sbjct: 277 LTYLHEDCHPRIIHRDIKSANILLDDAFEAKVADFGL-AKFTNDSVTHVSTRVMGTFGYL 335

Query: 341 ALPEECAC*N-SDSADVFLYIVLISNML 421
           A PE  +    +D +DVF + V++  ++
Sbjct: 336 A-PEYASSGKLTDRSDVFSFGVVLLELI 362


>07_03_1176 + 24567720-24570932
          Length = 1070

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = +2

Query: 164  LTELHDLCHPRPAEL-IASCTSLVRE*YEI*LTNLFLDCNWLRITHNYVSLLMFNSFCYV 340
            L  LHD C PR     +     L+   Y   L++  L    L  +  + +  +  +F YV
Sbjct: 897  LAYLHDTCVPRILHRDVKPSNILLDTEYNAYLSDFGL-ARLLGNSETHATTGVAGTFGYV 955

Query: 341  ALPEECAC*NSDSADVFLYIVLISNML 421
            A      C  SD ADV+ Y V++  ++
Sbjct: 956  APEYAMTCRVSDKADVYSYGVVLMELI 982


>12_02_0606 -
           20926179-20926594,20934542-20934707,20934788-20934991,
           20935076-20935288
          Length = 332

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 215 TRLARPALDDKDRGVRSALHIV-FSHSNCINSKLINFTG 102
           +  A   LD KD  + S  H +   H N   ++L NFTG
Sbjct: 178 SNFAGKGLDVKDLVILSGAHTIGVGHCNLFGARLFNFTG 216


>10_01_0026 - 351737-353443
          Length = 568

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
 Frame = +2

Query: 164 LTELHDLCHPRPAEL-IASCTSLVRE*YEI*LTNLFLDCNWLRITHNYVSLLMFNSFCYV 340
           L  LH+ CHPR     I +   L+   YE  + +  L       T+ +VS  +  +F Y+
Sbjct: 345 LAYLHEDCHPRIIHRDIKAANILLDANYEAMVADFGL-AKLTTDTNTHVSTRVMGTFGYL 403

Query: 341 ALPEECAC*N-SDSADVFLYIVLISNML 421
           A PE  +    ++ +DVF + V++  +L
Sbjct: 404 A-PEYASTGKLTEKSDVFSFGVMLLELL 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,744,508
Number of Sequences: 37544
Number of extensions: 213191
Number of successful extensions: 406
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)