Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0029
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   1.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.1  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   5.5  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   5.5  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 269 WPASWITFPSLSSPVISISTW*PASLLLV*LKXKTPSPRPNSTF 400
           WP +W +    SSP  S  T  P  ++   L+   P+ +P + F
Sbjct: 81  WPFAWGSLXRSSSPQTSAPTGPP--IVRCALRKHKPNRKPRTPF 122


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 538 VNVPVPDVPTYILNVSRREFCPS 606
           VNVPVP + + I+N   +   PS
Sbjct: 405 VNVPVPPMQSQIINPQPQITSPS 427


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -1

Query: 197 SYGRWGNGHGVE*SNHCKPRYARHSRINEQCR 102
           S  RW N +G   +NH +      +R N   R
Sbjct: 372 SNNRWHNNNGNNSNNHWRKNNPNDNRNNTSSR 403


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 610 GWMGRTLFLKHSIC 569
           GW G+T  LK S C
Sbjct: 135 GWKGKTCSLKDSHC 148


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,448
Number of Sequences: 336
Number of extensions: 3552
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)