Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0029
         (692 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    29   0.11 
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    26   0.98 
AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical prot...    24   4.0  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   6.9  

>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 29.5 bits (63), Expect = 0.11
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 444 EQHQCLAFLQQAQKHLSKLLHLDIQRTVIRQ 536
           E +QC   LQQAQ H+S+   +D +   +RQ
Sbjct: 812 EANQCQDLLQQAQYHVSRARKIDEEERSLRQ 842


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 26.2 bits (55), Expect = 0.98
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 508  STFSVPLFVRVNVPVPDVPTYILNVSRREFCPST 609
            S  S  LF+  +V  P+  T I+  S +  CP+T
Sbjct: 1686 SAASAALFILASVKAPNTATDIMQRSLKNKCPNT 1719


>AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical protein
           protein.
          Length = 278

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 493 VNFSTSTFSVPLFVRVNVPVP 555
           V+  + T  VP+F +V VPVP
Sbjct: 159 VSEKSKTVPVPVFQKVGVPVP 179


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -3

Query: 687  EYYHRRYKL 661
            EYYHR+YK+
Sbjct: 1066 EYYHRKYKI 1074


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 755,926
Number of Sequences: 2352
Number of extensions: 15862
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70250040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)