Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0029
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase f...    29   2.2  
At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase f...    29   2.2  
At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase f...    29   2.2  
At3g62350.1 68416.m07004 hypothetical protein                          29   2.2  
At5g49890.1 68418.m06178 chloride channel protein (CLC-c) identi...    28   5.1  
At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ...    28   5.1  
At5g25140.1 68418.m02979 cytochrome P450 family protein CYTOCHRO...    28   6.8  

>At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase
           family protein similar to ubiquitin-specific protease
           UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
           profile PF00443: Ubiquitin carboxyl-terminal hydrolase
          Length = 910

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 128 VERTGVCNGYFTRPHA--RYPICRMRRNGQE 214
           +ER  +C G++TR ++   YP+C M  +G++
Sbjct: 129 IERKLICQGFYTRSYSVEVYPLCLMLTDGRD 159


>At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase
           family protein similar to ubiquitin-specific protease
           UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
           profile PF00443: Ubiquitin carboxyl-terminal hydrolase
          Length = 910

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 128 VERTGVCNGYFTRPHA--RYPICRMRRNGQE 214
           +ER  +C G++TR ++   YP+C M  +G++
Sbjct: 129 IERKLICQGFYTRSYSVEVYPLCLMLTDGRD 159


>At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase
           family protein similar to ubiquitin-specific protease
           UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
           profile PF00443: Ubiquitin carboxyl-terminal hydrolase
          Length = 923

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 128 VERTGVCNGYFTRPHA--RYPICRMRRNGQE 214
           +ER  +C G++TR ++   YP+C M  +G++
Sbjct: 129 IERKLICQGFYTRSYSVEVYPLCLMLTDGRD 159


>At3g62350.1 68416.m07004 hypothetical protein
          Length = 228

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -2

Query: 508 RWRSLLRCF*ACCRNAKHWXXXXXXXXXXRIYHQCDESGVWS 383
           RW S+  C+    R  + W           ++ QC E  VWS
Sbjct: 118 RWVSIPECYTRYTRGVQMWSLNERLCLSDVLHRQCSELDVWS 159


>At5g49890.1 68418.m06178 chloride channel protein (CLC-c) identical
           to gi:1742956
          Length = 779

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 112 SLMRECRAYRGLQWLLHSTPCPL 180
           S++  C A+ GL WL   TPCP+
Sbjct: 387 SILSSCCAF-GLPWLSQCTPCPI 408


>At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 1006

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/87 (24%), Positives = 37/87 (42%)
 Frame = +2

Query: 152 GYFTRPHARYPICRMRRNGQEAVIDQRFTAISIPSXNTVWPASWITFPSLSSPVISISTW 331
           G+  R  AR   C+  +  +   +  R         NT++   W T P  +    +++  
Sbjct: 469 GFVERAFAR---CKDDKEKESCEVALRKIVKKAKEDNTLYTRDWDTEPLSTVTTTNVTNS 525

Query: 332 *PASLLLV*LKXKTPSPRPNSTFVALV 412
             +S  L  L+ K+P+ RP S +  LV
Sbjct: 526 ESSSAQLSSLQNKSPTRRPKSRWEPLV 552


>At5g25140.1 68418.m02979 cytochrome P450 family protein CYTOCHROME
           P450 71B1 - Thlaspi arvense, EMBL:L24438
          Length = 496

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -3

Query: 393 EFGLGEGVFXFNHTNNSDAGYQVDMLITGDDKDGKVI 283
           E GLGE  F  NHT     G  +D+L+ G D  G  I
Sbjct: 274 EIGLGEFQFTRNHTK----GILLDILLAGVDTSGHTI 306


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,490,557
Number of Sequences: 28952
Number of extensions: 321501
Number of successful extensions: 679
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)