Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0028
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch...    83   3e-17
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    27   1.9  
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    27   1.9  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    27   1.9  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    27   2.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   5.7  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.6  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   10.0 
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    25   10.0 
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    25   10.0 

>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
           Dap1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 166

 Score = 83.4 bits (197), Expect = 3e-17
 Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 7/116 (6%)
 Frame = +1

Query: 223 EIRRNSA*RKSL--LAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQ-----VA 381
           E++  +  + SL  LA+ G +++VT G +FYGP GPYSAFAG DA+RGLA        + 
Sbjct: 47  ELKEYNGSKNSLVFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASRGLAKNSFDDEFIP 106

Query: 382 ASENDEYDDVSDLGSDEIASAIEWEEQFRGKYGIVGRLLKLGERQKITVMMRAKTK 549
            S+ +E DD SDL  +E  +  +W+  F  KY  VGRL+   E +    +   + K
Sbjct: 107 DSDAEELDDCSDLNDEERQALNDWKAFFDQKYQAVGRLISPREARAAATISETEEK 162


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 250 KSLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATG 372
           + L+ +NG++ D+T  +   G G   SAF GKDAT     G
Sbjct: 373 RPLVLINGVVHDMTGFEHPGGQGLLRSAF-GKDATAAFNGG 412


>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
 Frame = +1

Query: 271 GIIFDVTRGKRFYGPGGPYSAFAGKDATR-GLATGQVAASENDEYDDV-SDLGSDEIASA 444
           GII D+ + K+F G G  ++  AG   T   LA  Q    +      V S++ S EI   
Sbjct: 51  GIITDLIKSKKFGGKGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEVYSSEIKKT 110

Query: 445 IEWEEQFRGKYGIVGRLLKLGERQKITVMMRAKTKN 552
               E FR   G+  +  K     ++T M+  + +N
Sbjct: 111 EALMENFRRAIGLRVKETKEVYEGEVTEMVPEEAEN 146


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = -1

Query: 584 QTSIPRIGLLRFLVFALIITVIFWRSPNLR-RRPTMPYFPLNCSS----HSMAEAISSEP 420
           Q  IPR G+L+   F     ++FW+    +  +  + Y P  C++    +SMA  + S+ 
Sbjct: 502 QYEIPRRGILQSNAFLAQEQLLFWKVITRKDAKWHLQYVPEACATIEAPNSMAGILESKK 561

Query: 419 RSLTSSYS 396
             + SS+S
Sbjct: 562 SEINSSFS 569


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = -1

Query: 479 PYFPLNCSSHSMAEAISSEPRSLTSSYSSFSDAATC-PVAKPLVASLPANAEYXXXXXXX 303
           PY P     H + EA   + +S  +  S+   +    P+ KP+ A++PA + Y       
Sbjct: 81  PYHPYY--QHKLTEAREGKLKSHATGLSTQKTSTLARPIQKPIEATIPAPSPYLFSEPLP 138

Query: 302 XXXLVTSNIIPFTAK 258
               +  +++  TA+
Sbjct: 139 SISSLDLDVLRLTAR 153


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 437 AISSEPRSLTSSYSSFSDAATCPVAKPLVASLPANAEY 324
           A  SE  S +S  SS+SD AT  +        P ++EY
Sbjct: 91  ATPSETNSYSSPVSSYSDPATSQLPSSTSFFSPTSSEY 128


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 358 GLATGQVAASENDEYDDVSDLGSDEIASAIEWEE 459
           G + G+++  E DEYDD     SDE+ S     E
Sbjct: 354 GKSQGEISEQEEDEYDDAE---SDEMHSPYSTHE 384


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -1

Query: 509 SPNLRRRPTMPYFPLNCSSHSMAEAISSEPRSLTSSYSSFSDAATCPVAKPLVAS 345
           S +L     +P    +  S S A AISS   S   S SSF+  A+      LV+S
Sbjct: 32  STSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSS 86


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 443 AEAISSEPRSLTSSYSSFSDAATCPVAKPLVAS 345
           AE +    RSL  SY+ FS +   P ++ L+A+
Sbjct: 4   AEQVHQSLRSLVLSYAHFSPSILIPASQYLLAA 36


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +2

Query: 17  QHVYKMADETNSLTVWDELTSPLNLVLIGVIVYLIYKIIKSNFESEAN 160
           +H Y++  +   L VW E        ++G++ Y+   + K  F   A+
Sbjct: 73  EHGYRVGQKLVELVVWRERNPKRETRILGILQYIHSSVWKYLFGKHAD 120


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +1

Query: 271 GIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEIASAIE 450
           G  F   +  R  GP  P       +A +    G +  +  D  DD++DLG++ IA  I+
Sbjct: 134 GCRFCSVKTSRRPGPLDPNEPENTAEAIKQWNLGYIVLTSVDR-DDLTDLGANHIAKTIQ 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,822
Number of Sequences: 5004
Number of extensions: 49758
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)