Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0028
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0544 - 18655186-18655567,18656835-18657151 81 8e-16
03_02_0826 + 11569961-11570301,11572220-11572454 81 8e-16
02_05_0089 - 25715637-25716333,25716481-25717238 80 1e-15
10_08_0543 - 18649894-18650233,18651446-18651981 78 6e-15
02_05_1047 + 33745656-33745964 75 4e-14
03_02_0079 + 5485090-5485238,5486066-5486137,5486764-5486840,548... 38 0.010
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 34 0.12
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468... 33 0.21
03_05_0260 + 22468243-22468292,22469125-22469125,22469130-224692... 31 1.1
11_02_0038 - 7631462-7634428,7635975-7636250 29 4.5
04_01_0050 - 536390-537231,538108-538375 29 4.5
03_05_0031 + 20040889-20041592,20041932-20041977 29 4.5
02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463... 29 4.5
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665... 29 4.5
>10_08_0544 - 18655186-18655567,18656835-18657151
Length = 232
Score = 81.0 bits (191), Expect = 8e-16
Identities = 39/82 (47%), Positives = 55/82 (67%)
Frame = +1
Query: 256 LLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEI 435
L+A+ G I+DVT+ + FYGPGGPY+ FAGKDA+R LA +++ D D+S LG E+
Sbjct: 92 LMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALA--KMSFEPQDLTGDISGLGPFEL 149
Query: 436 ASAIEWEEQFRGKYGIVGRLLK 501
+ +WE +F GKY VG + K
Sbjct: 150 DALQDWEYKFMGKYVKVGTVKK 171
>03_02_0826 + 11569961-11570301,11572220-11572454
Length = 191
Score = 81.0 bits (191), Expect = 8e-16
Identities = 38/80 (47%), Positives = 53/80 (66%)
Frame = +1
Query: 256 LLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEI 435
L+A+ G ++DVTRG+ FYGP GPYS FAG+DATR LA ++ D D+ LG DE+
Sbjct: 100 LIAIRGQVYDVTRGRLFYGPQGPYSLFAGRDATRALAL--MSFDPIDLTGDLDGLGPDEL 157
Query: 436 ASAIEWEEQFRGKYGIVGRL 495
+WE++F+ +Y VG L
Sbjct: 158 EVLQDWEDKFKERYPTVGHL 177
>02_05_0089 - 25715637-25716333,25716481-25717238
Length = 484
Score = 80.2 bits (189), Expect = 1e-15
Identities = 39/83 (46%), Positives = 56/83 (67%)
Frame = +1
Query: 256 LLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEI 435
L+A+ G I+DVT+ + FYGPGGPY+ FAG+DA+R LA +++ +D DVS LG E+
Sbjct: 239 LMAIKGQIYDVTQSRMFYGPGGPYALFAGRDASRALA--KMSFELDDLTGDVSGLGPIEL 296
Query: 436 ASAIEWEEQFRGKYGIVGRLLKL 504
+ EWE +F KY VG + K+
Sbjct: 297 EALHEWEGKFMSKYVKVGTIKKI 319
>10_08_0543 - 18649894-18650233,18651446-18651981
Length = 291
Score = 78.2 bits (184), Expect = 6e-15
Identities = 37/83 (44%), Positives = 56/83 (67%)
Frame = +1
Query: 256 LLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEI 435
L+A+ G I+DV++ + FYGPGGPY+ FAGKDA+R LA +++ D DD+S L E+
Sbjct: 165 LMAIKGQIYDVSQSRLFYGPGGPYALFAGKDASRALA--KMSFEPQDLTDDISGLSLLEL 222
Query: 436 ASAIEWEEQFRGKYGIVGRLLKL 504
++ +WE +F KY VG + K+
Sbjct: 223 SALQDWEYKFSSKYVKVGTIKKV 245
>02_05_1047 + 33745656-33745964
Length = 102
Score = 75.4 bits (177), Expect = 4e-14
Identities = 33/79 (41%), Positives = 52/79 (65%)
Frame = +1
Query: 259 LAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEIA 438
++V G ++DVT G+ FYGPGG Y+ FAG++A+R L G+++ + D D+S L E+
Sbjct: 24 VSVRGKVYDVTSGRGFYGPGGAYAVFAGREASRAL--GKMSKDDADVSGDLSGLSDKELG 81
Query: 439 SAIEWEEQFRGKYGIVGRL 495
+WE +F+ KY +V RL
Sbjct: 82 VLADWETKFQAKYPVVARL 100
>03_02_0079 +
5485090-5485238,5486066-5486137,5486764-5486840,
5486946-5486989,5487583-5487639,5487640-5487686,
5488010-5488184,5489501-5489662,5489845-5489883
Length = 273
Score = 37.5 bits (83), Expect = 0.010
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 277 IFDVTRGKRFYGPGGPYSAFAG 342
+FDVT+GK YGPGG Y FAG
Sbjct: 52 VFDVTKGKSNYGPGGGYHHFAG 73
>02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,
3238937-3239151,3239569-3240031,3240562-3240715,
3241724-3241833,3242540-3242797,3242843-3242854,
3243492-3243545,3244202-3244312,3244390-3244545,
3244798-3245201,3245405-3245501,3246041-3246050,
3246097-3246164,3246652-3246762,3246874-3247074,
3247384-3247485,3247980-3248087,3248209-3248411,
3248563-3248680,3248774-3248854,3248958-3249500,
3249602-3249730
Length = 1428
Score = 33.9 bits (74), Expect = 0.12
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 319 GPYSAFAGKDATRGLAT-GQVAASENDEYDDVSDLGSDEIASAIEWEEQFRGKYGIVGRL 495
G Y AG+ RGL G V DE + SDL + + E QFR Y ++ L
Sbjct: 856 GEYIQMAGRAGRRGLDNIGTVIVMCRDEIPEESDLKNLIVGKPTRLESQFRLTYTMILHL 915
Query: 496 LKLGERQKITVMMR 537
L++ E K+ M++
Sbjct: 916 LRV-EELKVEDMLK 928
>04_04_1623 -
34846056-34846223,34846547-34846644,34846738-34846829,
34847096-34847202,34847385-34847490,34848108-34848547
Length = 336
Score = 33.1 bits (72), Expect = 0.21
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -1
Query: 566 IGLL-RFLVFALIITVIFWRSPNLRRRPTMPYFPLNCSSHSMAEAISSEPRSLTSSYSSF 390
IGLL FLV LI TVI ++ NLR + P FP S+ A + P SL +
Sbjct: 14 IGLLFAFLVAKLISTVIAFKEDNLRITRSTPTFP---SAADTPAAPAPPPASLDGGHGDT 70
Query: 389 SDAA 378
SD +
Sbjct: 71 SDGS 74
>03_05_0260 +
22468243-22468292,22469125-22469125,22469130-22469285,
22469416-22469919
Length = 236
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -1
Query: 503 NLRRRPTMPYFPLNCSSHSMAEAISSEPRSLTSSYSSFSDAATCPVA 363
N +RR + P F NCS S+ A S+ S T S S CP A
Sbjct: 161 NNKRRESSP-FTSNCSGGSLTTATSTSTSSSTDSDGSLRQPPPCPRA 206
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 5 TRRTQHVYKMADETNSLTVWDELTSPLNL 91
T T+ Y M D TN V+DEL P NL
Sbjct: 803 TTHTKESYTMEDITNIENVFDELKPPCNL 831
>04_01_0050 - 536390-537231,538108-538375
Length = 369
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 403 DDVSDLGSDEIASAIEWEEQ 462
DDV GSD AS EWEE+
Sbjct: 333 DDVDSSGSDVYASLCEWEEE 352
>03_05_0031 + 20040889-20041592,20041932-20041977
Length = 249
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = -1
Query: 566 IGLLRFLVFALIITVIFWRSPNLRRRPTMPYFPLNCSSHSMAEAISSEPRSLTSSYSSFS 387
I L+R L L++ + W + + P P+ CSS S + +++S+Y F
Sbjct: 3 ITLVRLLPLVLVVALA-WPAAEAPAAASPPPDPVQCSSGS-----GTADCTVSSAYGVFP 56
Query: 386 DAATCPVAKPLVAS 345
D +TC A + S
Sbjct: 57 DRSTCRAAAAVYPS 70
>02_01_0618 -
4629776-4630037,4630188-4630330,4631200-4631254,
4631539-4631603,4631714-4631857,4632141-4632194,
4632363-4632410,4632466-4632541,4632624-4632722,
4633000-4633097,4633615-4633719,4633816-4633924,
4634137-4634252,4634332-4634496
Length = 512
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 8 RRTQHVYKMADETNSLTVWDELTSPLNLVLIGVIVYLIYK-IIKSNFESEAN 160
+ TQH Y + ET + +W S +++V+I +++ Y ++ S E + N
Sbjct: 242 KETQHCYSLELETQKMGIW---LSTISMVIIQLMIVEEYNDLVTSQLEKQRN 290
>01_06_0903 +
32862551-32864752,32865341-32865535,32866219-32866523,
32866664-32866849,32867137-32867314,32867548-32867574
Length = 1030
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 348 VFTSKRRVWASRSIKSLASSNIKYNSI 268
+F S RR W S+++ +LAS Y+S+
Sbjct: 218 LFLSSRRAWISQALTTLASDLTSYSSV 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,199,895
Number of Sequences: 37544
Number of extensions: 302922
Number of successful extensions: 833
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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