Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0028
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.)             113   2e-25
SB_8772| Best HMM Match : No HMM Matches (HMM E-Value=.)               69   3e-12
SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13)                61   7e-10
SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_10760| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)                 37   0.017
SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_58647| Best HMM Match : Galactosyl_T (HMM E-Value=0.01)             28   6.0  
SB_28695| Best HMM Match : Ras (HMM E-Value=0)                         28   7.9  

>SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score =  113 bits (271), Expect = 2e-25
 Identities = 55/89 (61%), Positives = 65/89 (73%), Gaps = 1/89 (1%)
 Frame = +1

Query: 256 LLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASE-NDEYDDVSDLGSDE 432
           L+AVNG +FDVTRGK FYGPGGPYS FAG DA+RGLAT  +      DEYDD+SDL   +
Sbjct: 78  LMAVNGKVFDVTRGKDFYGPGGPYSNFAGHDASRGLATFSLGPEAIKDEYDDLSDLNGMQ 137

Query: 433 IASAIEWEEQFRGKYGIVGRLLKLGERQK 519
             S  EWE+QF  KY +VGRLLK GE+ +
Sbjct: 138 QDSLREWEQQFDEKYDLVGRLLKPGEKHQ 166



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 20/61 (32%), Positives = 35/61 (57%)
 Frame = +2

Query: 53  LTVWDELTSPLNLVLIGVIVYLIYKIIKSNFESEANVXXXXXXXXKLRKDLTVAELKKYD 232
           L     L+SP+ +VL+ V+V++I +I+K+ F+               ++D T+ ELK+YD
Sbjct: 11  LNFLSSLSSPIQIVLLIVLVFVIRRILKAKFDKVPEEPPPKRLEPFKKRDFTLDELKEYD 70

Query: 233 G 235
           G
Sbjct: 71  G 71


>SB_8772| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
 Frame = +1

Query: 217 VEEIRRNSA*RKSLL--AVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQV---- 378
           V E++      K L+  AVNG +FDVT    ++GP GP    AGKDA+R L T  V    
Sbjct: 76  VRELKGYDGVNKELIYVAVNGKVFDVTSAWNYFGPAGPDCLLAGKDASRALVTFSVDNFY 135

Query: 379 AASENDEYDDVSDLGSDEIASAIEWEEQFRGKYGIVGRLLKLGERQKITVMMR 537
              + D  DD++DL   +     E+E Q+  +Y  VGRL++  ++Q +T+  R
Sbjct: 136 QTEQRDSMDDLNDLNPLQRDCLFEYETQYMERYPCVGRLVE--KKQPVTLQQR 186


>SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13)
          Length = 310

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 28/80 (35%), Positives = 48/80 (60%)
 Frame = +1

Query: 259 LAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEIA 438
           +A+ G ++DV +G+RFYGPG  Y  FAG+D+T    TG    ++    DD S+L ++++ 
Sbjct: 107 IAILGKVYDVEKGRRFYGPGTGYHVFAGRDSTPSFVTGMFDRAK--ATDDCSNLKNEDLL 164

Query: 439 SAIEWEEQFRGKYGIVGRLL 498
               W E ++  Y  VG+++
Sbjct: 165 GIKGWMEFYQKDYKYVGKVV 184


>SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 19/42 (45%), Positives = 29/42 (69%)
 Frame = +1

Query: 259 LAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAA 384
           +A+ G ++DV +G+RFYGPG  Y  FAG+D+T    T  V++
Sbjct: 291 IAILGKVYDVEKGRRFYGPGTGYHVFAGRDSTPSFVTVLVSS 332


>SB_10760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
 Frame = +1

Query: 259 LAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEIA 438
           +AV G++FDV+  K  YG G  Y++ AGK+ +R +A   +AA   +   ++  L  DE+ 
Sbjct: 67  VAVKGVVFDVSTSKDLYGYGESYNSMAGKECSRAIAKWSLAAENMN--GNLDGLTKDELQ 124

Query: 439 SAIE-WEEQFRGKYGIVGRLLKLGERQKITV 528
              + + + +  KY +VG +     R K  V
Sbjct: 125 RLEKNFHDVYMRKYPVVGYMHGFEPRLKDNV 155


>SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)
          Length = 1127

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
 Frame = +1

Query: 322 PYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEIASAIEWE---EQFRGKYGIVGR 492
           PY+ + G+D TR +   Q+A + N  +DDV+ L + +I   + W     +FR  + +V R
Sbjct: 421 PYAEYKGEDETRIVPFKQLAETANIMFDDVAKLPA-KIYFIVLWSIEARRFRVMFTLVAR 479

Query: 493 LLKLGERQKI 522
            LK  ER  +
Sbjct: 480 GLKTQERTNV 489


>SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1331

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -1

Query: 512 RSPNL--RRRPTMPYFPLNCSSHSMAEAISSEPRSLTSSYSSFSDAATCPVAK 360
           +SP L  R RP + + P   S H  A  +  +P  ++ S +  +  A CP  K
Sbjct: 378 KSPRLVPRLRPGLLHIPKTLSDHLRASTLDGKPVVMSGSNAEENGIAQCPTGK 430


>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6116

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 247  RKSLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASEND 396
            ++S  AV+ II DV      +  GG Y+A   +DA  G     V A +ND
Sbjct: 3628 QESTAAVSVIITDVNEHTPQFTSGGSYTAVIAEDAPVGSFVTNVTAIDND 3677


>SB_58647| Best HMM Match : Galactosyl_T (HMM E-Value=0.01)
          Length = 374

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -3

Query: 663 QNFYLITRFLGIRDTYPSVK*KLTHWSNVNPTNWLTEIF 547
           +N  L TRFLGI   YP  +    +WS V  TNW    F
Sbjct: 281 KNSDLCTRFLGIHQAYP--ERMREYWSLVK-TNWFNVSF 316


>SB_28695| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1058

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -1

Query: 464 NCSSHSMAEAISSEPRSLTSSYSSFS 387
           +CSSH  +++  S PR+++SS+ + S
Sbjct: 65  DCSSHGSSDSFFSSPRAVSSSFKTDS 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,786,992
Number of Sequences: 59808
Number of extensions: 354087
Number of successful extensions: 921
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)